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  5. Glyma.09G154900

Glyma.09G154900


Description : Arabidopsis thaliana protein of unknown function (DUF794)


Gene families : OG_42_0001137 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001137_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.09G154900
Cluster HCCA clusters: Cluster_170

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G007453 No alias Arabidopsis thaliana protein of unknown function (DUF794) 0.02 Orthogroups_2024-Update
Seita.1G309900.1 No alias organelle RNA splicing factor *(APO) 0.03 Orthogroups_2024-Update
Sobic.006G214700.1 No alias organelle RNA splicing factor *(APO) 0.02 Orthogroups_2024-Update
Solyc08g080250 No alias APO protein 1 (AHRD V3.3 *** F4I896_ARATH) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Predicted GO
BP GO:0001510 RNA methylation IEP Predicted GO
MF GO:0004176 ATP-dependent peptidase activity IEP Predicted GO
MF GO:0004252 serine-type endopeptidase activity IEP Predicted GO
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006508 proteolysis IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
MF GO:0008236 serine-type peptidase activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0017048 Rho GTPase binding IEP Predicted GO
MF GO:0017171 serine hydrolase activity IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0030488 tRNA methylation IEP Predicted GO
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
CC GO:0034708 methyltransferase complex IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
MF GO:0042623 ATPase activity, coupled IEP Predicted GO
CC GO:0043527 tRNA methyltransferase complex IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR023342 APO_dom 301 416
IPR023342 APO_dom 67 263
No external refs found!