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  5. Sopen09g029990

Sopen09g029990


Description : PPR repeat family


Gene families : OG_42_0009211 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009211_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen09g029990
Cluster HCCA clusters: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
Bradi3g16967 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Orthogroups_2024-Update
GRMZM2G012213 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
MA_482767g0010 No alias (at2g22070 : 622.0) pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
Sobic.004G255300.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 263 311
IPR002885 Pentatricopeptide_repeat 160 208
IPR002885 Pentatricopeptide_repeat 331 362
IPR002885 Pentatricopeptide_repeat 104 130
IPR002885 Pentatricopeptide_repeat 26 37
No external refs found!