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  5. Sopen09g030250

Sopen09g030250


Description : Glycosyl hydrolases family 28


Gene families : OG_42_0000259 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000259_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen09g030250
Cluster HCCA clusters: Cluster_193

Target Alias Description ECC score Gene Family Method Actions
A4A49_17242 No alias putative polygalacturonase 0.07 Orthogroups_2024-Update
At3g48950 No alias Endo-polygalacturonase-like protein... 0.05 Orthogroups_2024-Update
Bradi1g53430 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
Brara.F01639.1 No alias EC_3.2 glycosylase 0.02 Orthogroups_2024-Update
Brara.H02383.1 No alias EC_3.2 glycosylase 0.02 Orthogroups_2024-Update
Glyma.02G015600 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.09G041000 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.09G256100 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.15G146800 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
MA_10430135g0020 No alias (at3g62110 : 505.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
Potri.004G073900 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
Potri.008G211500 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Pp1s194_34V6 No alias glycoside hydrolase family 28 expressed 0.06 Orthogroups_2024-Update
Seita.4G004900.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Sobic.001G525000.1 No alias EC_3.2 glycosylase 0.05 Orthogroups_2024-Update
Sopen08g030460 No alias Glycosyl hydrolases family 28 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 106 446
No external refs found!