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  5. Glyma.09G213500

Glyma.09G213500


Description : Replication factor-A protein 1-related


Gene families : OG_42_0002224 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002224_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.09G213500
Cluster HCCA clusters: Cluster_333

Target Alias Description ECC score Gene Family Method Actions
At2g06510 No alias Replication protein A 70 kDa DNA-binding subunit A... 0.03 Orthogroups_2024-Update
Sobic.004G152000.1 No alias component *(RPA1) of single-stranded-DNA binding RPA... 0.03 Orthogroups_2024-Update
Solyc08g075840 No alias Replication protein A DNA-binding subunit (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
CC GO:0005634 nucleus IEA InterProScan predictions
BP GO:0006260 DNA replication IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
MF GO:0005544 calcium-dependent phospholipid binding IEP Predicted GO
BP GO:0006338 chromatin remodeling IEP Predicted GO
MF GO:0008289 lipid binding IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
MF GO:0017048 Rho GTPase binding IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
MF GO:0031491 nucleosome binding IEP Predicted GO
BP GO:0043044 ATP-dependent chromatin remodeling IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
InterPro domains Description Start Stop
IPR031657 REPA_OB_2 373 476
IPR001878 Znf_CCHC 849 864
IPR001878 Znf_CCHC 813 828
IPR004365 NA-bd_OB_tRNA 263 350
IPR007199 Rep_factor-A_N 5 103
IPR013955 Rep_factor-A_C 534 683
No external refs found!