Sopen09g030510

Description : Reverse transcriptase (RNA-dependent DNA polymerase)

Gene families : OG_42_0000013 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000013_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen09g030510
Cluster	HCCA clusters: Cluster_232

Target	Alias	Description	ECC score	Gene Family Method
A4A49_36363	No alias	putative carboxylesterase 2	0.03	Orthogroups_2024-Update
Brara.C00255.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Brara.H00283.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Glyma.07G211200	No alias	alpha/beta-Hydrolases superfamily protein	0.04	Orthogroups_2024-Update
HORVU2Hr1G003300.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
HORVU5Hr1G069110.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
HORVU5Hr1G069140.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
MA_893141g0010	No alias	(at5g16080 : 150.0) carboxyesterase 17 (CXE17);...	0.03	Orthogroups_2024-Update
MA_9721034g0010	No alias	(at5g06570 : 240.0) alpha/beta-Hydrolases superfamily...	0.03	Orthogroups_2024-Update
Seita.8G083000.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Sobic.002G228400.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Solyc04g079190	No alias	alpha/beta-Hydrolases superfamily protein (AHRD V3.3 ***...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	InterProScan predictions
MF	GO:0016787	hydrolase activity	IEA	InterProScan predictions
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR013103	RVT_2	1168	1413
IPR029472	Copia-like_N	353	398
IPR001584	Integrase_cat-core	805	917
IPR025724	GAG-pre-integrase_dom	722	789
IPR013094	AB_hydrolase_3	82	269

External Links

No external refs found!