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  5. Glyma.09G259500

Glyma.09G259500


Description : RHO guanyl-nucleotide exchange factor 3


Gene families : OG_42_0000202 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000202_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.09G259500
Cluster HCCA clusters: Cluster_255

Target Alias Description ECC score Gene Family Method Actions
A4A49_11151 No alias rop guanine nucleotide exchange factor 5 0.03 Orthogroups_2024-Update
At2g45890 No alias Rop guanine nucleotide exchange factor 4... 0.03 Orthogroups_2024-Update
Glyma.10G104767 No alias RHO guanyl-nucleotide exchange factor 7 0.03 Orthogroups_2024-Update
Glyma.18G190100 No alias RHO guanyl-nucleotide exchange factor 7 0.03 Orthogroups_2024-Update
LOC_Os02g47420 No alias ATROPGEF7/ROPGEF7, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os09g37270 No alias ATROPGEF7/ROPGEF7, putative, expressed 0.02 Orthogroups_2024-Update
MA_79976g0010 No alias (at3g24620 : 322.0) Encodes a member of KPP-like gene... 0.03 Orthogroups_2024-Update
Potri.008G062000 No alias ROP guanine nucleotide exchange factor 5 0.03 Orthogroups_2024-Update
Potri.014G084200 No alias RHO guanyl-nucleotide exchange factor 3 0.03 Orthogroups_2024-Update
Sobic.003G254200.1 No alias RopGEF guanine nucleotide exchange factor *(PRONE) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predicted GO
MF GO:0005215 transporter activity IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
MF GO:0008131 primary amine oxidase activity IEP Predicted GO
MF GO:0015399 primary active transmembrane transporter activity IEP Predicted GO
MF GO:0015405 P-P-bond-hydrolysis-driven transmembrane transporter activity IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Predicted GO
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
MF GO:0022804 active transmembrane transporter activity IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
BP GO:0030490 maturation of SSU-rRNA IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0030686 90S preribosome IEP Predicted GO
CC GO:0030688 preribosome, small subunit precursor IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
MF GO:0042623 ATPase activity, coupled IEP Predicted GO
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
MF GO:0043492 ATPase activity, coupled to movement of substances IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0048038 quinone binding IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
InterPro domains Description Start Stop
IPR005512 PRONE_dom 93 305
IPR005512 PRONE_dom 357 508
No external refs found!