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  5. Glyma.10G006300

Glyma.10G006300


Description : Regulator of chromosome condensation (RCC1) family protein


Gene families : OG_42_0000452 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000452_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.10G006300
Cluster HCCA clusters: Cluster_160

Target Alias Description ECC score Gene Family Method Actions
At3g47660 No alias Regulator of chromosome condensation (RCC1) family... 0.03 Orthogroups_2024-Update
GRMZM2G029815 No alias Regulator of chromosome condensation (RCC1) family with... 0.02 Orthogroups_2024-Update
Glyma.02G280400 No alias Regulator of chromosome condensation (RCC1) family with... 0.03 Orthogroups_2024-Update
Glyma.09G278400 No alias Regulator of chromosome condensation (RCC1) family protein 0.03 Orthogroups_2024-Update
Glyma.18G121800 No alias Regulator of chromosome condensation (RCC1) family with... 0.03 Orthogroups_2024-Update
HORVU0Hr1G028990.3 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU1Hr1G056870.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU2Hr1G124270.6 No alias Unknown function 0.03 Orthogroups_2024-Update
PSME_00001886-RA No alias (at5g19420 : 94.4) Regulator of chromosome condensation... 0.02 Orthogroups_2024-Update
Potri.002G070300 No alias Regulator of chromosome condensation (RCC1) family with... 0.03 Orthogroups_2024-Update
Potri.003G197600 No alias Regulator of chromosome condensation (RCC1) family with... 0.03 Orthogroups_2024-Update
Solyc03g005590 No alias Regulator of chromosome condensation (RCC1) family... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0004888 transmembrane signaling receptor activity IEP Predicted GO
MF GO:0004970 ionotropic glutamate receptor activity IEP Predicted GO
MF GO:0005230 extracellular ligand-gated ion channel activity IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0005991 trehalose metabolic process IEP Predicted GO
BP GO:0005992 trehalose biosynthetic process IEP Predicted GO
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Predicted GO
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Predicted GO
MF GO:0008066 glutamate receptor activity IEP Predicted GO
MF GO:0008194 UDP-glycosyltransferase activity IEP Predicted GO
BP GO:0008593 regulation of Notch signaling pathway IEP Predicted GO
BP GO:0009966 regulation of signal transduction IEP Predicted GO
BP GO:0009967 positive regulation of signal transduction IEP Predicted GO
BP GO:0010646 regulation of cell communication IEP Predicted GO
BP GO:0010647 positive regulation of cell communication IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
BP GO:0016051 carbohydrate biosynthetic process IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
MF GO:0022824 transmitter-gated ion channel activity IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0022835 transmitter-gated channel activity IEP Predicted GO
BP GO:0023051 regulation of signaling IEP Predicted GO
BP GO:0023056 positive regulation of signaling IEP Predicted GO
MF GO:0030594 neurotransmitter receptor activity IEP Predicted GO
CC GO:0031012 extracellular matrix IEP Predicted GO
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Predicted GO
MF GO:0038023 signaling receptor activity IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
BP GO:0044262 cellular carbohydrate metabolic process IEP Predicted GO
CC GO:0044421 extracellular region part IEP Predicted GO
BP GO:0045747 positive regulation of Notch signaling pathway IEP Predicted GO
BP GO:0046351 disaccharide biosynthetic process IEP Predicted GO
BP GO:0048518 positive regulation of biological process IEP Predicted GO
BP GO:0048522 positive regulation of cellular process IEP Predicted GO
BP GO:0048583 regulation of response to stimulus IEP Predicted GO
BP GO:0048584 positive regulation of response to stimulus IEP Predicted GO
MF GO:0060089 molecular transducer activity IEP Predicted GO
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Predicted GO
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000306 Znf_FYVE 606 671
IPR027988 BRX_N 854 889
IPR000408 Reg_chr_condens 281 329
IPR000408 Reg_chr_condens 501 550
IPR000408 Reg_chr_condens 387 436
IPR000408 Reg_chr_condens 555 602
IPR000408 Reg_chr_condens 332 383
IPR000408 Reg_chr_condens 451 498
IPR013591 Brevis_radix_dom 996 1050
No external refs found!