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  5. Glyma.10G007980

Glyma.10G007980


Description : Helicase protein with RING/U-box domain


Gene families : OG_42_0001293 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001293_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.10G007980
Cluster HCCA clusters: Cluster_172

Target Alias Description ECC score Gene Family Method Actions
A4A49_17680 No alias SMARCA3-like 1 0.03 Orthogroups_2024-Update
LOC_Os02g32570 No alias SNF2 family N-terminal domain containing protein, expressed 0.02 Orthogroups_2024-Update
MA_111652g0010 No alias (at5g22750 : 1161.0) DNA repair gene. gamma-radiation... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004470 malic enzyme activity IEP Predicted GO
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016615 malate dehydrogenase activity IEP Predicted GO
MF GO:0016790 thiolester hydrolase activity IEP Predicted GO
CC GO:0031012 extracellular matrix IEP Predicted GO
CC GO:0044421 extracellular region part IEP Predicted GO
InterPro domains Description Start Stop
IPR018957 Znf_C3HC4_RING-type 2 34
IPR001650 Helicase_C 67 162
No external refs found!