Glyma.10G032200

Description : photosystem II reaction center W

Gene families : OG_42_0003970 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003970_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Glycine release: Glyma.10G032200
Cluster	HCCA clusters: Cluster_156

Target	Alias	Description	ECC score	Gene Family Method
A4A49_05181	No alias	photosystem ii reaction center w protein, chloroplastic	0.1	Orthogroups_2024-Update
A4A49_19163	No alias	photosystem ii reaction center w protein, chloroplastic	0.06	Orthogroups_2024-Update
Bradi2g20380	No alias	photosystem II reaction center W	0.05	Orthogroups_2024-Update
Brara.D01828.1	No alias	component *(PsbW) of PS-II complex	0.07	Orthogroups_2024-Update
Brara.E01277.1	No alias	component *(PsbW) of PS-II complex	0.04	Orthogroups_2024-Update
HORVU1Hr1G078140.4	No alias	component *(PsbW) of PS-II complex	0.03	Orthogroups_2024-Update
HORVU3Hr1G075870.1	No alias	component *(PsbW) of PS-II complex	0.03	Orthogroups_2024-Update
Kfl00638_0030	kfl00638_0030_v1.1	no hits & (original description: no original description)	0.06	Orthogroups_2024-Update
Mp5g14190.1	No alias	component PsbW of PS-II complex	0.09	Orthogroups_2024-Update
PSME_00010732-RA	No alias	no hits & (original description: no original description)	0.04	Orthogroups_2024-Update
Pp1s185_110V6	No alias	photosystem ii reaction center w chloroplast	0.1	Orthogroups_2024-Update
Pp1s185_111V6	No alias	photosystem ii reaction center w chloroplast	0.04	Orthogroups_2024-Update
Seita.3G184900.1	No alias	component *(PsbW) of PS-II complex	0.07	Orthogroups_2024-Update
Seita.5G336700.1	No alias	component *(PsbW) of PS-II complex	0.09	Orthogroups_2024-Update
Sobic.003G313000.1	No alias	component *(PsbW) of PS-II complex	0.1	Orthogroups_2024-Update
Sobic.009G191300.1	No alias	component *(PsbW) of PS-II complex	0.03	Orthogroups_2024-Update
Solyc06g084050	No alias	LOW QUALITY:isochorismate synthase 2 (AHRD V3.3 --* AT1G18870.2)	0.04	Orthogroups_2024-Update
Solyc09g065910	No alias	photosystem II reaction center W (AHRD V3.3 *** AT2G30570.1)	0.04	Orthogroups_2024-Update
Sopen06g035440	No alias	Photosystem II reaction centre W protein (PsbW)	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
CC	GO:0009507	chloroplast	IEA	InterProScan predictions
CC	GO:0009521	photosystem	None	Extended
CC	GO:0009523	photosystem II	IEA	InterProScan predictions
CC	GO:0009536	plastid	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015979	photosynthesis	IEA	InterProScan predictions
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044425	membrane part	None	Extended
CC	GO:0044436	thylakoid part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005319	lipid transporter activity	IEP	Predicted GO
MF	GO:0005509	calcium ion binding	IEP	Predicted GO
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	Predicted GO
BP	GO:0006869	lipid transport	IEP	Predicted GO
CC	GO:0009512	cytochrome b6f complex	IEP	Predicted GO
CC	GO:0009522	photosystem I	IEP	Predicted GO
CC	GO:0009538	photosystem I reaction center	IEP	Predicted GO
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	Predicted GO
BP	GO:0015994	chlorophyll metabolic process	IEP	Predicted GO
BP	GO:0015995	chlorophyll biosynthetic process	IEP	Predicted GO
CC	GO:0016020	membrane	IEP	Predicted GO
CC	GO:0019898	extrinsic component of membrane	IEP	Predicted GO
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	Predicted GO
CC	GO:0034357	photosynthetic membrane	IEP	Predicted GO
BP	GO:0042440	pigment metabolic process	IEP	Predicted GO
CC	GO:0042651	thylakoid membrane	IEP	Predicted GO
BP	GO:0046148	pigment biosynthetic process	IEP	Predicted GO
MF	GO:0046406	magnesium protoporphyrin IX methyltransferase activity	IEP	Predicted GO
BP	GO:0061024	membrane organization	IEP	Predicted GO
CC	GO:0070069	cytochrome complex	IEP	Predicted GO
BP	GO:0120009	intermembrane lipid transfer	IEP	Predicted GO
MF	GO:0120013	intermembrane lipid transfer activity	IEP	Predicted GO
CC	GO:1902494	catalytic complex	IEP	Predicted GO
CC	GO:1990204	oxidoreductase complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR009806	PSII_PsbW_class2	1	136

External Links

No external refs found!

Glyma.10G032200

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation