1. Home
  2. Species
  3. Glycine max
  4. Sequence
  5. Glyma.10G113200

Glyma.10G113200


Description : hAT transposon superfamily


Gene families : OG_42_0000049 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000049_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.10G113200
Cluster HCCA clusters: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
Glyma.08G294500 No alias hAT transposon superfamily 0.03 Orthogroups_2024-Update
PSME_00020468-RA No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
PSME_00050173-RA No alias (at3g17450 : 133.0) hAT dimerisation domain-containing... 0.03 Orthogroups_2024-Update
PSME_00055084-RA No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
PSME_00057200-RA No alias (at5g33406 : 93.6) hAT dimerisation domain-containing... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
CC GO:0005618 cell wall IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
InterPro domains Description Start Stop
IPR007021 DUF659 218 366
IPR008906 HATC_C_dom 593 658
No external refs found!