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  5. Sopen09g032300

Sopen09g032300


Description : linker histone H1 and H5 family


Gene families : OG_42_0000689 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000689_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen09g032300
Cluster HCCA clusters: Cluster_191

Target Alias Description ECC score Gene Family Method Actions
A4A49_02893 No alias histone h1 0.04 Orthogroups_2024-Update
Bradi1g55260 No alias winged-helix DNA-binding transcription factor family protein 0.03 Orthogroups_2024-Update
Bradi5g19000 No alias histone H1-3 0.02 Orthogroups_2024-Update
GRMZM2G080274 No alias histone H1-3 0.04 Orthogroups_2024-Update
GRMZM2G121221 No alias winged-helix DNA-binding transcription factor family protein 0.04 Orthogroups_2024-Update
GRMZM2G401308 No alias winged-helix DNA-binding transcription factor family protein 0.05 Orthogroups_2024-Update
HORVU2Hr1G094400.5 No alias linker histone *(H1) 0.03 Orthogroups_2024-Update
HORVU5Hr1G106550.2 No alias linker histone *(H1) 0.03 Orthogroups_2024-Update
HORVU5Hr1G106610.2 No alias linker histone *(H1) 0.04 Orthogroups_2024-Update
HORVU5Hr1G106730.2 No alias linker histone *(H1) 0.04 Orthogroups_2024-Update
Kfl00023_0480 kfl00023_0480_v1.1 (p23444|h1_maize : 87.4) Histone H1 - Zea mays (Maize) &... 0.02 Orthogroups_2024-Update
MA_10436125g0020 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
MA_500183g0010 No alias (original description: no original description) 0.02 Orthogroups_2024-Update
MA_5243726g0010 No alias (p27806|h1_wheat : 91.3) Histone H1 - Triticum aestivum... 0.02 Orthogroups_2024-Update
PSME_00002381-RA No alias (p23444|h1_maize : 102.0) Histone H1 - Zea mays (Maize)... 0.03 Orthogroups_2024-Update
PSME_00018264-RA No alias (original description: no original description) 0.03 Orthogroups_2024-Update
PSME_00053828-RA No alias (original description: no original description) 0.03 Orthogroups_2024-Update
PSME_00054433-RA No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
Potri.002G043100 No alias winged-helix DNA-binding transcription factor family protein 0.03 Orthogroups_2024-Update
Potri.005G219800 No alias winged-helix DNA-binding transcription factor family protein 0.03 Orthogroups_2024-Update
Solyc06g084020 No alias histone H1 0.05 Orthogroups_2024-Update
Solyc09g083380 No alias Histone H1 (AHRD V3.3 *-* H1_MAIZE) 0.13 Orthogroups_2024-Update
evm.model.contig_2062.24 No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
evm.model.tig00020780.71 No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
CC GO:0005634 nucleus IEA InterProScan predictions
BP GO:0006334 nucleosome assembly IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR005818 Histone_H1/H5_H15 20 85
No external refs found!