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  5. Sopen09g032750

Sopen09g032750


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000008 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen09g032750
Cluster HCCA clusters: Cluster_283

Target Alias Description ECC score Gene Family Method Actions
LOC_Os01g37610 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
LOC_Os01g71840 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
LOC_Os08g30360 No alias retrotransposon protein, putative, Ty1-copia subclass 0.02 Orthogroups_2024-Update
Solyc02g062480 No alias No description available 0.03 Orthogroups_2024-Update
Solyc10g054830 No alias No description available 0.02 Orthogroups_2024-Update
Sopen05g007860 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
BP GO:0015074 DNA integration IEA InterProScan predictions
MF GO:0016491 oxidoreductase activity IEA InterProScan predictions
BP GO:0055114 oxidation-reduction process IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR005123 Oxoglu/Fe-dep_dioxygenase 1553 1649
IPR001878 Znf_CCHC 230 247
IPR013103 RVT_2 842 1085
IPR001584 Integrase_cat-core 482 594
IPR026992 DIOX_N 1396 1495
IPR025724 GAG-pre-integrase_dom 401 465
No external refs found!