Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Glycine release: Glyma.10G190600 | |
Cluster | HCCA clusters: Cluster_173 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
424099 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
70183 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
A4A49_13653 | No alias | pentatricopeptide repeat-containing protein | 0.02 | Orthogroups_2024-Update | |
A4A49_19306 | No alias | pentatricopeptide repeat-containing protein,... | 0.03 | Orthogroups_2024-Update | |
A4A49_22283 | No alias | pentatricopeptide repeat-containing protein | 0.04 | Orthogroups_2024-Update | |
A4A49_25971 | No alias | pentatricopeptide repeat-containing protein | 0.03 | Orthogroups_2024-Update | |
At5g03800 | No alias | Glycosyltransferase (Fragment)... | 0.03 | Orthogroups_2024-Update | |
Bradi1g51700 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
Bradi2g23670 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Bradi3g32220 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Bradi4g41840 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Brara.A00474.1 | No alias | Unknown function | 0.05 | Orthogroups_2024-Update | |
Brara.E02154.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Brara.F00415.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Brara.F01619.1 | No alias | RNA editing factor *(ECD1) | 0.03 | Orthogroups_2024-Update | |
GRMZM2G022884 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
GRMZM2G163359 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
GRMZM2G163396 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
GRMZM2G331779 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
GRMZM2G430710 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
GRMZM2G456114 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
GRMZM5G862936 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Glyma.02G250600 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.13G357000 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
HORVU0Hr1G015970.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
HORVU1Hr1G087370.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
HORVU3Hr1G092840.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
HORVU5Hr1G101000.3 | No alias | RNA editing factor *(DEK36) | 0.03 | Orthogroups_2024-Update | |
LOC_Os03g64370 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
LOC_Os07g39910 | No alias | pentatricopeptide repeat domain containing protein,... | 0.02 | Orthogroups_2024-Update | |
PSME_00011618-RA | No alias | (at3g57430 : 608.0) Encodes a chloroplast RNA editing... | 0.03 | Orthogroups_2024-Update | |
PSME_00022688-RA | No alias | (at3g46790 : 282.0) Encodes a member of a PCMP (plant... | 0.03 | Orthogroups_2024-Update | |
PSME_00046266-RA | No alias | (at1g11290 : 679.0) Pentatricopeptide Repeat Protein... | 0.02 | Orthogroups_2024-Update | |
PSME_00047081-RA | No alias | (at1g18485 : 652.0) Pentatricopeptide repeat (PPR)... | 0.02 | Orthogroups_2024-Update | |
PSME_00048055-RA | No alias | (at4g13650 : 598.0) Pentatricopeptide repeat (PPR)... | 0.02 | Orthogroups_2024-Update | |
PSME_00051698-RA | No alias | (at3g57430 : 715.0) Encodes a chloroplast RNA editing... | 0.03 | Orthogroups_2024-Update | |
PSME_00056336-RA | No alias | (at1g11290 : 707.0) Pentatricopeptide Repeat Protein... | 0.02 | Orthogroups_2024-Update | |
Potri.001G019500 | No alias | SLOW GROWTH 1 | 0.03 | Orthogroups_2024-Update | |
Potri.001G322100 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
Potri.004G059400 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Potri.006G245300 | No alias | Function unknown | 0.04 | Orthogroups_2024-Update | |
Potri.016G077700 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Potri.018G067500 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
Seita.1G076000.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Seita.1G272500.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Seita.2G091900.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Seita.2G109100.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Seita.5G065900.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Seita.5G385400.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Seita.9G339400.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Seita.9G355700.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Seita.9G477500.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Sobic.001G312700.1 | No alias | RNA editing factor *(MEF25) | 0.03 | Orthogroups_2024-Update | |
Sobic.001G347100.2 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.001G436600.3 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.002G200500.3 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Sobic.006G122100.2 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Sobic.009G079400.1 | No alias | RNA editing factor *(ECD1) | 0.02 | Orthogroups_2024-Update | |
Solyc01g081560 | No alias | LOW QUALITY:Pentatricopeptide repeat-containing protein... | 0.04 | Orthogroups_2024-Update | |
Solyc02g079380 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.03 | Orthogroups_2024-Update | |
Solyc03g051780 | No alias | Pectin lyase-like superfamily protein (AHRD V3.3 *** AT3G57790.2) | 0.02 | Orthogroups_2024-Update | |
Solyc03g119120 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.03 | Orthogroups_2024-Update | |
Solyc04g016540 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.03 | Orthogroups_2024-Update | |
Solyc04g082870 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.03 | Orthogroups_2024-Update | |
Solyc10g008590 | No alias | Pentatricopeptide repeat-containing protein, putative... | 0.03 | Orthogroups_2024-Update | |
Solyc10g080220 | No alias | Pentatricopeptide repeat superfamily protein (AHRD V3.3... | 0.03 | Orthogroups_2024-Update | |
Solyc11g008940 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.03 | Orthogroups_2024-Update | |
Solyc12g042400 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.03 | Orthogroups_2024-Update | |
Sopen01g032600 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
Sopen01g041280 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
Sopen03g011150 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
Sopen03g028590 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
Sopen03g034990 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
Sopen04g008620 | No alias | PPR repeat | 0.02 | Orthogroups_2024-Update | |
Sopen05g018650 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
Sopen07g026910 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0000148 | 1,3-beta-D-glucan synthase complex | IEP | Predicted GO |
CC | GO:0000151 | ubiquitin ligase complex | IEP | Predicted GO |
CC | GO:0000152 | nuclear ubiquitin ligase complex | IEP | Predicted GO |
BP | GO:0001522 | pseudouridine synthesis | IEP | Predicted GO |
BP | GO:0002097 | tRNA wobble base modification | IEP | Predicted GO |
BP | GO:0002098 | tRNA wobble uridine modification | IEP | Predicted GO |
MF | GO:0003824 | catalytic activity | IEP | Predicted GO |
MF | GO:0003843 | 1,3-beta-D-glucan synthase activity | IEP | Predicted GO |
MF | GO:0004356 | glutamate-ammonia ligase activity | IEP | Predicted GO |
MF | GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | IEP | Predicted GO |
MF | GO:0004611 | phosphoenolpyruvate carboxykinase activity | IEP | Predicted GO |
MF | GO:0004612 | phosphoenolpyruvate carboxykinase (ATP) activity | IEP | Predicted GO |
CC | GO:0005680 | anaphase-promoting complex | IEP | Predicted GO |
BP | GO:0005975 | carbohydrate metabolic process | IEP | Predicted GO |
BP | GO:0006006 | glucose metabolic process | IEP | Predicted GO |
BP | GO:0006074 | (1->3)-beta-D-glucan metabolic process | IEP | Predicted GO |
BP | GO:0006075 | (1->3)-beta-D-glucan biosynthetic process | IEP | Predicted GO |
BP | GO:0006094 | gluconeogenesis | IEP | Predicted GO |
BP | GO:0006396 | RNA processing | IEP | Predicted GO |
BP | GO:0006399 | tRNA metabolic process | IEP | Predicted GO |
BP | GO:0006400 | tRNA modification | IEP | Predicted GO |
BP | GO:0006541 | glutamine metabolic process | IEP | Predicted GO |
BP | GO:0006542 | glutamine biosynthetic process | IEP | Predicted GO |
BP | GO:0006778 | porphyrin-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0006787 | porphyrin-containing compound catabolic process | IEP | Predicted GO |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | Predicted GO |
BP | GO:0007088 | regulation of mitotic nuclear division | IEP | Predicted GO |
BP | GO:0007346 | regulation of mitotic cell cycle | IEP | Predicted GO |
BP | GO:0008033 | tRNA processing | IEP | Predicted GO |
MF | GO:0008081 | phosphoric diester hydrolase activity | IEP | Predicted GO |
BP | GO:0008152 | metabolic process | IEP | Predicted GO |
MF | GO:0008536 | Ran GTPase binding | IEP | Predicted GO |
BP | GO:0009064 | glutamine family amino acid metabolic process | IEP | Predicted GO |
BP | GO:0009084 | glutamine family amino acid biosynthetic process | IEP | Predicted GO |
BP | GO:0009451 | RNA modification | IEP | Predicted GO |
MF | GO:0009982 | pseudouridine synthase activity | IEP | Predicted GO |
BP | GO:0010564 | regulation of cell cycle process | IEP | Predicted GO |
BP | GO:0010965 | regulation of mitotic sister chromatid separation | IEP | Predicted GO |
BP | GO:0015994 | chlorophyll metabolic process | IEP | Predicted GO |
BP | GO:0015996 | chlorophyll catabolic process | IEP | Predicted GO |
BP | GO:0016051 | carbohydrate biosynthetic process | IEP | Predicted GO |
BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
MF | GO:0016211 | ammonia ligase activity | IEP | Predicted GO |
MF | GO:0016880 | acid-ammonia (or amide) ligase activity | IEP | Predicted GO |
MF | GO:0017056 | structural constituent of nuclear pore | IEP | Predicted GO |
BP | GO:0019319 | hexose biosynthetic process | IEP | Predicted GO |
BP | GO:0030071 | regulation of mitotic metaphase/anaphase transition | IEP | Predicted GO |
CC | GO:0031461 | cullin-RING ubiquitin ligase complex | IEP | Predicted GO |
BP | GO:0033015 | tetrapyrrole catabolic process | IEP | Predicted GO |
BP | GO:0033043 | regulation of organelle organization | IEP | Predicted GO |
BP | GO:0033044 | regulation of chromosome organization | IEP | Predicted GO |
BP | GO:0033045 | regulation of sister chromatid segregation | IEP | Predicted GO |
BP | GO:0033047 | regulation of mitotic sister chromatid segregation | IEP | Predicted GO |
CC | GO:0033588 | Elongator holoenzyme complex | IEP | Predicted GO |
BP | GO:0034470 | ncRNA processing | IEP | Predicted GO |
BP | GO:0034660 | ncRNA metabolic process | IEP | Predicted GO |
BP | GO:0042440 | pigment metabolic process | IEP | Predicted GO |
BP | GO:0043170 | macromolecule metabolic process | IEP | Predicted GO |
BP | GO:0043412 | macromolecule modification | IEP | Predicted GO |
BP | GO:0044237 | cellular metabolic process | IEP | Predicted GO |
BP | GO:0044238 | primary metabolic process | IEP | Predicted GO |
BP | GO:0046149 | pigment catabolic process | IEP | Predicted GO |
BP | GO:0046364 | monosaccharide biosynthetic process | IEP | Predicted GO |
MF | GO:0047746 | chlorophyllase activity | IEP | Predicted GO |
BP | GO:0051128 | regulation of cellular component organization | IEP | Predicted GO |
BP | GO:0051187 | cofactor catabolic process | IEP | Predicted GO |
BP | GO:0051783 | regulation of nuclear division | IEP | Predicted GO |
BP | GO:0051983 | regulation of chromosome segregation | IEP | Predicted GO |
BP | GO:0071704 | organic substance metabolic process | IEP | Predicted GO |
BP | GO:1901987 | regulation of cell cycle phase transition | IEP | Predicted GO |
BP | GO:1901990 | regulation of mitotic cell cycle phase transition | IEP | Predicted GO |
BP | GO:1902099 | regulation of metaphase/anaphase transition of cell cycle | IEP | Predicted GO |
CC | GO:1902494 | catalytic complex | IEP | Predicted GO |
BP | GO:1905818 | regulation of chromosome separation | IEP | Predicted GO |
CC | GO:1990234 | transferase complex | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 480 | 527 |
IPR002885 | Pentatricopeptide_repeat | 99 | 145 |
IPR002885 | Pentatricopeptide_repeat | 245 | 288 |
IPR032867 | DYW_dom | 653 | 777 |
IPR002885 | Pentatricopeptide_repeat | 215 | 240 |
IPR002885 | Pentatricopeptide_repeat | 70 | 91 |
IPR002885 | Pentatricopeptide_repeat | 350 | 377 |
IPR002885 | Pentatricopeptide_repeat | 554 | 578 |
IPR002885 | Pentatricopeptide_repeat | 454 | 476 |
IPR002885 | Pentatricopeptide_repeat | 382 | 411 |
IPR002885 | Pentatricopeptide_repeat | 322 | 347 |
IPR002885 | Pentatricopeptide_repeat | 620 | 649 |
No external refs found! |