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  5. Glyma.10G204400

Glyma.10G204400


Description : AP2/B3 transcription factor family protein


Gene families : OG_42_0000305 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000305_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.10G204400
Cluster HCCA clusters: Cluster_79

Target Alias Description ECC score Gene Family Method Actions
At1g68840 No alias TEM2 [Source:UniProtKB/TrEMBL;Acc:A0A178WNP0] 0.04 Orthogroups_2024-Update
Bradi2g17610 No alias ethylene response DNA binding factor 3 0.03 Orthogroups_2024-Update
Bradi2g47220 No alias AP2/B3 transcription factor family protein 0.03 Orthogroups_2024-Update
Bradi3g32140 No alias AP2/B3-like transcriptional factor family protein 0.03 Orthogroups_2024-Update
Brara.A03401.1 No alias RAV/NGATHA-type transcription factor 0.03 Orthogroups_2024-Update
Brara.B03202.1 No alias RAV/NGATHA-type transcription factor & AP2-RAV-type... 0.03 Orthogroups_2024-Update
Brara.E00098.1 No alias RAV/NGATHA-type transcription factor 0.03 Orthogroups_2024-Update
Brara.E00866.1 No alias RAV/NGATHA-type transcription factor 0.03 Orthogroups_2024-Update
GRMZM2G082227 No alias AP2/B3-like transcriptional factor family protein 0.03 Orthogroups_2024-Update
Glyma.07G048200 No alias AP2/B3-like transcriptional factor family protein 0.03 Orthogroups_2024-Update
HORVU1Hr1G082670.6 No alias RAV/NGATHA-type transcription factor & AP2-RAV-type... 0.04 Orthogroups_2024-Update
HORVU3Hr1G010100.2 No alias RAV/NGATHA-type transcription factor & AP2-RAV-type... 0.02 Orthogroups_2024-Update
HORVU3Hr1G010190.5 No alias RAV/NGATHA-type transcription factor & AP2-RAV-type... 0.05 Orthogroups_2024-Update
HORVU3Hr1G010200.1 No alias RAV/NGATHA-type transcription factor 0.03 Orthogroups_2024-Update
HORVU3Hr1G064640.4 No alias RAV/NGATHA-type transcription factor & AP2-RAV-type... 0.05 Orthogroups_2024-Update
LOC_Os01g04800 No alias B3 DNA binding domain containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os05g47650 No alias B3 DNA binding domain containing protein, expressed 0.04 Orthogroups_2024-Update
MA_10428163g0010 No alias (at1g13260 : 267.0) Encodes an AP2/B3 domain... 0.04 Orthogroups_2024-Update
MA_116574g0010 No alias (at3g25730 : 256.0) ethylene response DNA binding factor... 0.03 Orthogroups_2024-Update
MA_246350g0010 No alias (at1g13260 : 168.0) Encodes an AP2/B3 domain... 0.03 Orthogroups_2024-Update
PSME_00021294-RA No alias (at1g13260 : 294.0) Encodes an AP2/B3 domain... 0.04 Orthogroups_2024-Update
PSME_00030049-RA No alias (q71vm4|ima1a_orysa : 404.0) Importin alpha-1a subunit -... 0.03 Orthogroups_2024-Update
PSME_00032471-RA No alias (at1g68840 : 300.0) Rav2 is part of a complex that has... 0.05 Orthogroups_2024-Update
PSME_00035556-RA No alias (at3g25730 : 293.0) ethylene response DNA binding factor... 0.06 Orthogroups_2024-Update
PSME_00048986-RA No alias (at1g25560 : 246.0) Encodes a member of the RAV... 0.03 Orthogroups_2024-Update
PSME_00057154-RA No alias (at1g13260 : 282.0) Encodes an AP2/B3 domain... 0.05 Orthogroups_2024-Update
Potri.006G208100 No alias AP2/B3-like transcriptional factor family protein 0.05 Orthogroups_2024-Update
Potri.010G129200 No alias AP2/B3 transcription factor family protein 0.03 Orthogroups_2024-Update
Seita.6G064600.1 No alias RAV/NGATHA-type transcription factor 0.03 Orthogroups_2024-Update
Sobic.003G265200.1 No alias RAV/NGATHA-type transcription factor & AP2-RAV-type... 0.03 Orthogroups_2024-Update
Solyc04g007000 No alias AP2/B3 transcription factor family protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Sopen04g002090 No alias B3 DNA binding domain 0.05 Orthogroups_2024-Update
Sopen05g005620 No alias B3 DNA binding domain 0.04 Orthogroups_2024-Update
Sopen09g004970 No alias B3 DNA binding domain 0.03 Orthogroups_2024-Update
Sopen10g032690 No alias B3 DNA binding domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0003700 DNA-binding transcription factor activity IEA InterProScan predictions
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Predicted GO
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0004673 protein histidine kinase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Predicted GO
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 172 269
IPR001471 AP2/ERF_dom 52 100
No external refs found!