Sopen09g033330

Description : RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Gene families : OG_42_0006789 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006789_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen09g033330
Cluster	HCCA clusters: Cluster_128

Target	Alias	Description	ECC score	Gene Family Method
MA_176544g0010	No alias	(at2g33440 : 83.6) RNA-binding (RRM/RBD/RNP motifs)...	0.02	Orthogroups_2024-Update
Potri.010G068400	No alias	RNA-binding (RRM/RBD/RNP motifs) family protein	0.03	Orthogroups_2024-Update
Solyc09g090420	No alias	Splicing factor u2af large subunit, putative (AHRD V3.3...	0.05	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	464	531

External Links

No external refs found!