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  5. Solyc02g086990

Solyc02g086990


Description : Cyclic nucleotide-gated channel (AHRD V3.3 *** A0A0K9PRG4_ZOSMR)


Gene families : OG_42_0000108 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000108_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc02g086990
Cluster HCCA clusters: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
84488 No alias cyclic nucleotide-gated cation channel 4 0.03 Orthogroups_2024-Update
A4A49_24346 No alias cyclic nucleotide-gated ion channel 2 0.02 Orthogroups_2024-Update
At5g15410 No alias Cyclic nucleotide-gated ion channel 2... 0.03 Orthogroups_2024-Update
Brara.I04465.1 No alias cyclic nucleotide-gated cation channel *(CNGC) 0.03 Orthogroups_2024-Update
GRMZM6G059647 No alias cyclic nucleotide-gated channel 18 0.02 Orthogroups_2024-Update
Potri.006G271050 No alias cyclic nucleotide-gated channel 14 0.03 Orthogroups_2024-Update
Potri.018G009200 No alias cyclic nucleotide-gated channel 14 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005216 ion channel activity IEA InterProScan predictions
BP GO:0006811 ion transport IEA InterProScan predictions
CC GO:0016020 membrane IEA InterProScan predictions
BP GO:0055085 transmembrane transport IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0004871 obsolete signal transducer activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
BP GO:0007165 signal transduction IEP Predicted GO
BP GO:0007264 small GTPase mediated signal transduction IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0019725 cellular homeostasis IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0035556 intracellular signal transduction IEP Predicted GO
BP GO:0042592 homeostatic process IEP Predicted GO
BP GO:0045454 cell redox homeostasis IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0065008 regulation of biological quality IEP Predicted GO
InterPro domains Description Start Stop
IPR005821 Ion_trans_dom 45 371
IPR000595 cNMP-bd_dom 469 554
No external refs found!