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  5. Glyma.10G258300

Glyma.10G258300


Description : Transducin/WD40 repeat-like superfamily protein


Gene families : OG_42_0004410 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004410_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.10G258300
Cluster HCCA clusters: Cluster_84

Target Alias Description ECC score Gene Family Method Actions
At1g49910 No alias BUB3.2 [Source:UniProtKB/TrEMBL;Acc:A0A178W7L6] 0.03 Orthogroups_2024-Update
At3g19590 No alias BUB3.1 [Source:UniProtKB/TrEMBL;Acc:A0A178VA46] 0.08 Orthogroups_2024-Update
Mp1g09140.1 No alias BUB3 spindle assembly checkpoint protein 0.07 Orthogroups_2024-Update
Solyc01g107160 No alias Transducin/WD40 repeat-like superfamily protein (AHRD... 0.08 Orthogroups_2024-Update
Sopen01g049420 No alias WD domain, G-beta repeat 0.08 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
CC GO:0000796 condensin complex IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
BP GO:0006323 DNA packaging IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
BP GO:0007076 mitotic chromosome condensation IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
BP GO:0022402 cell cycle process IEP Predicted GO
BP GO:0030261 chromosome condensation IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
BP GO:1903047 mitotic cell cycle process IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 18 45
IPR001680 WD40_repeat 228 269
IPR001680 WD40_repeat 94 126
No external refs found!