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  5. Glyma.10G262600

Glyma.10G262600


Description : plant U-box 22


Gene families : OG_42_0000112 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000112_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.10G262600
Cluster HCCA clusters: Cluster_148

Target Alias Description ECC score Gene Family Method Actions
A4A49_34426 No alias e3 ubiquitin-protein ligase pub24 0.03 Orthogroups_2024-Update
At3g18710 No alias RING-type E3 ubiquitin transferase... 0.03 Orthogroups_2024-Update
At5g37490 No alias U-box domain-containing protein 21... 0.03 Orthogroups_2024-Update
Brara.B01640.1 No alias E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.D00589.1 No alias E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
GRMZM2G151204 No alias CYS, MET, PRO, and GLY protein 1 0.02 Orthogroups_2024-Update
Glyma.08G000400 No alias plant U-box 25 0.03 Orthogroups_2024-Update
Glyma.11G178046 No alias plant U-box 24 0.03 Orthogroups_2024-Update
LOC_Os02g46500 No alias U-box, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os06g13870 No alias U-box protein CMPG1, putative, expressed 0.02 Orthogroups_2024-Update
MA_10432179g0010 No alias (at3g52450 : 121.0) Encodes a cytoplasmically localized... 0.03 Orthogroups_2024-Update
MA_415393g0010 No alias (at3g19380 : 146.0) plant U-box 25 (PUB25); FUNCTIONS... 0.02 Orthogroups_2024-Update
PSME_00028678-RA No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
PSME_00043995-RA No alias (at1g49780 : 227.0) plant U-box 26 (PUB26); FUNCTIONS... 0.04 Orthogroups_2024-Update
Potri.017G135000 No alias ARM repeat superfamily protein 0.03 Orthogroups_2024-Update
Seita.7G104100.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Solyc01g080920 No alias LOW QUALITY:U-box domain-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc01g107980 No alias U-box domain-containing family protein (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Solyc06g074140 No alias LOW QUALITY:U-box domain-containing family protein (AHRD... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA InterProScan predictions
BP GO:0016567 protein ubiquitination IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0005667 transcription factor complex IEP Predicted GO
CC GO:0005669 transcription factor TFIID complex IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Predicted GO
MF GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
MF GO:0030570 pectate lyase activity IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
MF GO:2001070 starch binding IEP Predicted GO
InterPro domains Description Start Stop
IPR003613 Ubox_domain 8 80
No external refs found!