Sopen09g033600

Description : WD domain, G-beta repeat

Gene families : OG_42_0003027 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003027_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen09g033600
Cluster	HCCA clusters: Cluster_122

Target	Alias	Description	ECC score	Gene Family Method
A4A49_03001	No alias	pre-mrna-processing factor 19	0.03	Orthogroups_2024-Update
Bradi1g75750	No alias	MOS4-associated complex 3A	0.02	Orthogroups_2024-Update
Brara.D02025.1	No alias	E3 ubiquitin protein ligase (PUB60) & component (MAC3)...	0.04	Orthogroups_2024-Update
Glyma.10G133700	No alias	MOS4-associated complex 3B	0.03	Orthogroups_2024-Update
Kfl00154_0220	kfl00154_0220_v1.1	(at1g04510 : 621.0) Encodes MAC3A, a U-box proteins with...	0.02	Orthogroups_2024-Update
Potri.008G171600	No alias	MOS4-associated complex 3B	0.06	Orthogroups_2024-Update
Seita.9G228900.1	No alias	component *(MAC3) of MAC spliceosome-associated complex...	0.05	Orthogroups_2024-Update
Sobic.001G226000.1	No alias	component *(MAC3) of MAC spliceosome-associated complex...	0.03	Orthogroups_2024-Update
Solyc09g090660	No alias	Transducin/WD40 repeat-like superfamily protein (AHRD...	0.03	Orthogroups_2024-Update
evm.model.contig_4508.1	No alias	(at2g41500 : 122.0) Encodes LACHESIS (LIS), a protein...	0.02	Orthogroups_2024-Update
evm.model.tig00001501.3	No alias	(at1g04510 : 193.0) Encodes MAC3A, a U-box proteins with...	0.02	Orthogroups_2024-Update
evm.model.tig00021493.5	No alias	(at1g04510 : 103.0) Encodes MAC3A, a U-box proteins with...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	InterProScan predictions
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	InterProScan predictions
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001680	WD40_repeat	387	422
IPR001680	WD40_repeat	254	291
IPR001680	WD40_repeat	483	511
IPR013915	Pre-mRNA_splic_Prp19	66	131
IPR003613	Ubox_domain	3	55

External Links

No external refs found!