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  5. Glyma.10G288300

Glyma.10G288300


Description : high-mobility group box 6


Gene families : OG_42_0000453 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000453_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.10G288300
Cluster HCCA clusters: Cluster_336

Target Alias Description ECC score Gene Family Method Actions
A4A49_15500 No alias high mobility group b protein 7 0.07 Orthogroups_2024-Update
Brara.B03718.1 No alias DNA bending architectural protein *(HMG-B) 0.04 Orthogroups_2024-Update
Brara.I00619.1 No alias DNA bending architectural protein *(HMG-B) 0.03 Orthogroups_2024-Update
Cre11.g480950 No alias high mobility group B3 0.03 Orthogroups_2024-Update
GRMZM2G156785 No alias high mobility group B4 0.03 Orthogroups_2024-Update
GRMZM5G834758 No alias high mobility group B3 0.03 Orthogroups_2024-Update
Kfl00271_0080 kfl00271_0080_v1.1 (at5g23420 : 89.4) Encodes HMGB6, a protein belonging to... 0.03 Orthogroups_2024-Update
MA_86565g0010 No alias (at5g23420 : 100.0) Encodes HMGB6, a protein belonging... 0.05 Orthogroups_2024-Update
Pp1s277_31V6 No alias high mobility group family 0.03 Orthogroups_2024-Update
Sobic.007G000500.1 No alias DNA bending architectural protein *(HMG-B) 0.03 Orthogroups_2024-Update
Solyc02g082700 No alias High mobility group protein (AHRD V3.3 *** O49948_SOLTU) 0.04 Orthogroups_2024-Update
Solyc04g008820 No alias High mobility group protein (AHRD V3.3 *-* O49948_SOLTU) 0.06 Orthogroups_2024-Update
Sopen04g004000 No alias HMG (high mobility group) box 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
MF GO:0030599 pectinesterase activity IEP Predicted GO
CC GO:0031090 organelle membrane IEP Predicted GO
CC GO:0031966 mitochondrial membrane IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0042545 cell wall modification IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0045229 external encapsulating structure organization IEP Predicted GO
MF GO:0052689 carboxylic ester hydrolase activity IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
BP GO:0071554 cell wall organization or biogenesis IEP Predicted GO
BP GO:0071555 cell wall organization IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 103 172
No external refs found!