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  5. Glyma.11G004100

Glyma.11G004100


Description : Homeotic gene regulator


Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.11G004100
Cluster HCCA clusters: Cluster_443

Target Alias Description ECC score Gene Family Method Actions
130534 No alias chromatin remodeling 4 0.02 Orthogroups_2024-Update
155996 No alias chromatin remodeling factor CHD3 (PICKLE) 0.04 Orthogroups_2024-Update
164481 No alias P-loop containing nucleoside triphosphate hydrolases... 0.02 Orthogroups_2024-Update
440203 No alias chromatin-remodeling protein 11 0.03 Orthogroups_2024-Update
440815 No alias chromatin remodeling 5 0.04 Orthogroups_2024-Update
AC235535.1_FG001 No alias chromatin-remodeling protein 11 0.03 Orthogroups_2024-Update
At2g25170 No alias chromatin remodeling factor CHD3 (PICKLE)... 0.05 Orthogroups_2024-Update
At3g06010 No alias Probable ATP-dependent DNA helicase CHR12... 0.03 Orthogroups_2024-Update
At3g06400 No alias Chromatin-remodeling complex ATPase... 0.04 Orthogroups_2024-Update
At5g18620 No alias Chromatin-remodeling complex ATPase... 0.03 Orthogroups_2024-Update
At5g44800 No alias PKR1 [Source:UniProtKB/TrEMBL;Acc:A0A178UKW2] 0.03 Orthogroups_2024-Update
Bradi1g18910 No alias chromatin remodeling 5 0.14 Orthogroups_2024-Update
Bradi1g26940 No alias chromatin remodeling 4 0.05 Orthogroups_2024-Update
Bradi1g44177 No alias P-loop containing nucleoside triphosphate hydrolases... 0.06 Orthogroups_2024-Update
Bradi1g47367 No alias chromatin remodeling factor CHD3 (PICKLE) 0.03 Orthogroups_2024-Update
Cre03.g179300 No alias chromatin remodeling 5 0.02 Orthogroups_2024-Update
Cre07.g325700 No alias transcription regulatory protein SNF2, putative 0.02 Orthogroups_2024-Update
GRMZM2G316191 No alias chromatin remodeling 4 0.04 Orthogroups_2024-Update
GRMZM2G467799 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 Orthogroups_2024-Update
HORVU2Hr1G022450.1 No alias component *(CHR5) of SAGA transcription co-activator... 0.04 Orthogroups_2024-Update
Kfl00010_0280 kfl00010_0280_v1.1 (at3g06010 : 961.0) Encodes AtCHR12, a SNF2/Brahma-type... 0.02 Orthogroups_2024-Update
Kfl00590_0040 kfl00590_0040_v1.1 (at2g28290 : 922.0) Encodes a SWI2/SNF2-like protein in... 0.02 Orthogroups_2024-Update
LOC_Os07g31450 No alias CHR4/MI-2-LIKE, putative, expressed 0.03 Orthogroups_2024-Update
Mp2g26680.1 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.02 Orthogroups_2024-Update
Mp3g15030.1 No alias chromatin remodeling factor (Iswi) 0.03 Orthogroups_2024-Update
Mp4g00040.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.02 Orthogroups_2024-Update
PSME_00000429-RA No alias (at2g28290 : 480.0) Encodes a SWI2/SNF2-like protein in... 0.03 Orthogroups_2024-Update
PSME_00001593-RA No alias (at2g13370 : 1311.0) chromatin remodeling 5 (CHR5);... 0.03 Orthogroups_2024-Update
PSME_00005765-RA No alias (q7g8y3|isw2_orysa : 1630.0) Probable chromatin... 0.03 Orthogroups_2024-Update
PSME_00006567-RA No alias (at5g44800 : 1157.0) chromatin remodeling 4 (CHR4);... 0.04 Orthogroups_2024-Update
PSME_00009907-RA No alias (at2g25170 : 144.0) Encodes a SWI/SWF nuclear-localized... 0.02 Orthogroups_2024-Update
PSME_00009909-RA No alias (at2g25170 : 296.0) Encodes a SWI/SWF nuclear-localized... 0.04 Orthogroups_2024-Update
PSME_00015826-RA No alias (at3g06010 : 472.0) Encodes AtCHR12, a SNF2/Brahma-type... 0.04 Orthogroups_2024-Update
Pp1s223_99V6 No alias chromodomain helicase dna binding protein 5 0.02 Orthogroups_2024-Update
Pp1s235_76V6 No alias chromatin remodeling complex subunit 0.03 Orthogroups_2024-Update
Pp1s317_10V6 No alias chromodomain-helicase-dna-binding protein 0.02 Orthogroups_2024-Update
Pp1s360_39V6 No alias syd atpase chromatin binding 0.03 Orthogroups_2024-Update
Seita.2G320900.1 No alias CHD3-type chromatin remodeling factor *(PKL/PKR) 0.05 Orthogroups_2024-Update
Seita.2G419600.1 No alias component *(CHR5) of SAGA transcription co-activator... 0.03 Orthogroups_2024-Update
Seita.3G058900.1 No alias SMARCA component *(SYD/BRM/MINU) 0.03 Orthogroups_2024-Update
Seita.4G050000.1 No alias CHD3-type chromatin remodeling factor *(PKL/PKR) 0.03 Orthogroups_2024-Update
Seita.4G112400.1 No alias SMARCA component *(SYD/BRM/MINU) 0.04 Orthogroups_2024-Update
Sobic.003G163200.1 No alias ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.03 Orthogroups_2024-Update
Sobic.010G065300.1 No alias CHD3-type chromatin remodeling factor *(PKL/PKR) 0.07 Orthogroups_2024-Update
Solyc02g068560 No alias CHD3-type chromatin-remodeling factor PICKLE (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc06g065730 No alias chromatin remodeling factor CHD3 (PICKLE) (AHRD V3.3 ***... 0.04 Orthogroups_2024-Update
Solyc08g029130 No alias chromatin remodeling factor CHD3 (PICKLE) (AHRD V3.3 ***... 0.04 Orthogroups_2024-Update
Solyc11g062010 No alias Chromatin structure-remodeling complex subunit snf21... 0.03 Orthogroups_2024-Update
Sopen02g017710 No alias SNF2 family N-terminal domain 0.04 Orthogroups_2024-Update
Sopen12g034530 No alias SNF2 family N-terminal domain 0.03 Orthogroups_2024-Update
evm.model.contig_2077.13 No alias (at2g13370 : 595.0) chromatin remodeling 5 (CHR5);... 0.02 Orthogroups_2024-Update
evm.model.tig00000144.188 No alias (at5g66750 : 92.4) Protein is similar to SWI2/SNF2... 0.01 Orthogroups_2024-Update
evm.model.tig00000217.24 No alias (at2g28290 : 140.0) Encodes a SWI2/SNF2-like protein in... 0.02 Orthogroups_2024-Update
evm.model.tig00000217.25 No alias (at2g28290 : 284.0) Encodes a SWI2/SNF2-like protein in... 0.02 Orthogroups_2024-Update
evm.model.tig00000802.67 No alias (at3g06010 : 465.0) Encodes AtCHR12, a SNF2/Brahma-type... 0.04 Orthogroups_2024-Update
evm.model.tig00000983.26 No alias (at2g13370 : 651.0) chromatin remodeling 5 (CHR5);... 0.02 Orthogroups_2024-Update
evm.model.tig00020960.24 No alias (at2g13370 : 202.0) chromatin remodeling 5 (CHR5);... 0.06 Orthogroups_2024-Update
evm.model.tig00021623.13 No alias (at2g25170 : 464.0) Encodes a SWI/SWF nuclear-localized... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
MF GO:0042393 histone binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predicted GO
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0001871 pattern binding IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0003777 microtubule motor activity IEP Predicted GO
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004560 alpha-L-fucosidase activity IEP Predicted GO
MF GO:0004820 glycine-tRNA ligase activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0006426 glycyl-tRNA aminoacylation IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Predicted GO
BP GO:0006904 vesicle docking involved in exocytosis IEP Predicted GO
BP GO:0006928 movement of cell or subcellular component IEP Predicted GO
BP GO:0007017 microtubule-based process IEP Predicted GO
BP GO:0007018 microtubule-based movement IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0009056 catabolic process IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
BP GO:0009314 response to radiation IEP Predicted GO
BP GO:0009411 response to UV IEP Predicted GO
BP GO:0009416 response to light stimulus IEP Predicted GO
BP GO:0009628 response to abiotic stimulus IEP Predicted GO
BP GO:0009892 negative regulation of metabolic process IEP Predicted GO
BP GO:0009966 regulation of signal transduction IEP Predicted GO
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
BP GO:0010646 regulation of cell communication IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
MF GO:0015928 fucosidase activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0017069 snRNA binding IEP Predicted GO
MF GO:0017070 U6 snRNA binding IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
BP GO:0019439 aromatic compound catabolic process IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
MF GO:0019899 enzyme binding IEP Predicted GO
BP GO:0022406 membrane docking IEP Predicted GO
MF GO:0022804 active transmembrane transporter activity IEP Predicted GO
BP GO:0023051 regulation of signaling IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
CC GO:0030118 clathrin coat IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030125 clathrin vesicle coat IEP Predicted GO
CC GO:0030126 COPI vesicle coat IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Predicted GO
CC GO:0030132 clathrin coat of coated pit IEP Predicted GO
MF GO:0030247 polysaccharide binding IEP Predicted GO
MF GO:0030623 U5 snRNA binding IEP Predicted GO
BP GO:0032012 regulation of ARF protein signal transduction IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034655 nucleobase-containing compound catabolic process IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
BP GO:0044248 cellular catabolic process IEP Predicted GO
BP GO:0044265 cellular macromolecule catabolic process IEP Predicted GO
BP GO:0044270 cellular nitrogen compound catabolic process IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044431 Golgi apparatus part IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044459 plasma membrane part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0046578 regulation of Ras protein signal transduction IEP Predicted GO
BP GO:0046700 heterocycle catabolic process IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0048193 Golgi vesicle transport IEP Predicted GO
BP GO:0048278 vesicle docking IEP Predicted GO
BP GO:0048519 negative regulation of biological process IEP Predicted GO
BP GO:0048583 regulation of response to stimulus IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0051640 organelle localization IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
CC GO:0098797 plasma membrane protein complex IEP Predicted GO
BP GO:0140029 exocytic process IEP Predicted GO
BP GO:0140056 organelle localization by membrane tethering IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
BP GO:1901361 organic cyclic compound catabolic process IEP Predicted GO
BP GO:1901575 organic substance catabolic process IEP Predicted GO
BP GO:1902531 regulation of intracellular signal transduction IEP Predicted GO
MF GO:2001070 starch binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000330 SNF2_N 386 662
IPR001650 Helicase_C 682 795
IPR029295 SnAC 875 949
No external refs found!