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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Glycine release: Glyma.11G008800 | |
| Cluster | HCCA clusters: Cluster_250 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Bradi1g27320 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Bradi1g35640 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Bradi2g24060 | No alias | mitochondrial editing factor 21 | 0.03 | Orthogroups_2024-Update | |
| Bradi3g57730 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Brara.A03095.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Brara.G01460.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| GRMZM2G076257 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| GRMZM2G168170 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| GRMZM2G176523 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| HORVU1Hr1G058280.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| HORVU1Hr1G074220.1 | No alias | RNA editing factor *(MEF21) | 0.03 | Orthogroups_2024-Update | |
| HORVU1Hr1G083680.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| HORVU2Hr1G012210.2 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| HORVU2Hr1G107430.1 | No alias | RNA editing factor *(MEF10) | 0.03 | Orthogroups_2024-Update | |
| HORVU3Hr1G073540.14 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| HORVU4Hr1G009150.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| PSME_00014659-RA | No alias | (at1g11290 : 712.0) Pentatricopeptide Repeat Protein... | 0.04 | Orthogroups_2024-Update | |
| PSME_00034399-RA | No alias | (at4g33170 : 426.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
| PSME_00036148-RA | No alias | (at2g22070 : 583.0) pentatricopeptide (PPR)... | 0.03 | Orthogroups_2024-Update | |
| PSME_00057163-RA | No alias | (at1g11290 : 707.0) Pentatricopeptide Repeat Protein... | 0.04 | Orthogroups_2024-Update | |
| Potri.013G006700 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Pp1s162_103V6 | No alias | hypothetical protein [Oryza sativa (japonica cultivar-group)] | 0.02 | Orthogroups_2024-Update | |
| Seita.3G244200.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.001G513000.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.002G384800.1 | No alias | Unknown function | 0.06 | Orthogroups_2024-Update | |
| Sobic.002G403500.3 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Solyc02g069500 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.03 | Orthogroups_2024-Update | |
| Solyc07g008890 | No alias | Pentatricopeptide repeat superfamily protein (AHRD V3.3... | 0.03 | Orthogroups_2024-Update | |
| evm.model.contig_2421.9 | No alias | (at5g39710 : 153.0) EMBRYO DEFECTIVE 2745 (EMB2745);... | 0.01 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Predicted GO |
| BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Predicted GO |
| BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | Predicted GO |
| CC | GO:0005681 | spliceosomal complex | IEP | Predicted GO |
| BP | GO:0006397 | mRNA processing | IEP | Predicted GO |
| BP | GO:0006811 | ion transport | IEP | Predicted GO |
| BP | GO:0008380 | RNA splicing | IEP | Predicted GO |
| MF | GO:0015095 | magnesium ion transmembrane transporter activity | IEP | Predicted GO |
| BP | GO:0015693 | magnesium ion transport | IEP | Predicted GO |
| BP | GO:0016071 | mRNA metabolic process | IEP | Predicted GO |
| MF | GO:0016872 | intramolecular lyase activity | IEP | Predicted GO |
| MF | GO:0046873 | metal ion transmembrane transporter activity | IEP | Predicted GO |
| BP | GO:0070838 | divalent metal ion transport | IEP | Predicted GO |
| BP | GO:0072511 | divalent inorganic cation transport | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 446 | 494 |
| IPR002885 | Pentatricopeptide_repeat | 345 | 392 |
| IPR032867 | DYW_dom | 621 | 742 |
| IPR002885 | Pentatricopeptide_repeat | 587 | 615 |
| IPR002885 | Pentatricopeptide_repeat | 521 | 545 |
| IPR002885 | Pentatricopeptide_repeat | 147 | 176 |
| IPR002885 | Pentatricopeptide_repeat | 247 | 277 |
| No external refs found! |