Sopen09g034930

Description : PPR repeat

Gene families : OG_42_0012199 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0012199_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen09g034930
Cluster	HCCA clusters: Cluster_107

Target	Alias	Description	ECC score	Gene Family Method	Actions
Potri.001G316500	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.03	Orthogroups_2024-Update
Solyc09g092050	No alias	Pentatricopeptide repeat-containing family protein (AHRD...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR032867	DYW_dom	533	656
IPR002885	Pentatricopeptide_repeat	358	405
IPR002885	Pentatricopeptide_repeat	257	306
IPR002885	Pentatricopeptide_repeat	225	254
IPR002885	Pentatricopeptide_repeat	196	223
IPR002885	Pentatricopeptide_repeat	434	457
IPR002885	Pentatricopeptide_repeat	93	122

External Links

No external refs found!