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  5. Glyma.11G113000

Glyma.11G113000


Description : Coatomer, alpha subunit


Gene families : OG_42_0002646 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002646_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.11G113000
Cluster HCCA clusters: Cluster_468

Target Alias Description ECC score Gene Family Method Actions
Bradi1g78470 No alias Coatomer, alpha subunit 0.03 Orthogroups_2024-Update
Bradi2g55640 No alias Coatomer, alpha subunit 0.04 Orthogroups_2024-Update
Cre13.g565850 No alias Coatomer, alpha subunit 0.03 Orthogroups_2024-Update
Kfl00045_0430 kfl00045_0430_v1.1 (at1g62020 : 1226.0) Coatomer, alpha subunit; FUNCTIONS... 0.02 Orthogroups_2024-Update
PSME_00024193-RA No alias (at1g62020 : 1949.0) Coatomer, alpha subunit; FUNCTIONS... 0.03 Orthogroups_2024-Update
PSME_00051512-RA No alias (at1g62020 : 1810.0) Coatomer, alpha subunit; FUNCTIONS... 0.03 Orthogroups_2024-Update
Potri.015G069700 No alias Coatomer, alpha subunit 0.03 Orthogroups_2024-Update
Pp1s135_34V6 No alias coatomer alpha 0.05 Orthogroups_2024-Update
Pp1s86_189V6 No alias coatomer alpha 0.04 Orthogroups_2024-Update
Seita.5G140600.1 No alias subunit alpha of coat protein complex 0.03 Orthogroups_2024-Update
Seita.9G119500.1 No alias subunit alpha of coat protein complex 0.05 Orthogroups_2024-Update
Sobic.001G117800.1 No alias subunit alpha of coat protein complex 0.04 Orthogroups_2024-Update
Sobic.003G029600.1 No alias subunit alpha of coat protein complex 0.05 Orthogroups_2024-Update
Solyc07g032100 No alias Coatomer subunit alpha (AHRD V3.3 *** K4CDF4_SOLLC) 0.03 Orthogroups_2024-Update
evm.model.tig00000144.152 No alias (at1g62020 : 592.0) Coatomer, alpha subunit; FUNCTIONS... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA InterProScan predictions
MF GO:0005515 protein binding IEA InterProScan predictions
BP GO:0006886 intracellular protein transport IEA InterProScan predictions
BP GO:0016192 vesicle-mediated transport IEA InterProScan predictions
CC GO:0030117 membrane coat IEA InterProScan predictions
CC GO:0030126 COPI vesicle coat IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Predicted GO
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEP Predicted GO
BP GO:0006099 tricarboxylic acid cycle IEP Predicted GO
BP GO:0006101 citrate metabolic process IEP Predicted GO
BP GO:0006188 IMP biosynthetic process IEP Predicted GO
BP GO:0006189 'de novo' IMP biosynthetic process IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP Predicted GO
BP GO:0009966 regulation of signal transduction IEP Predicted GO
BP GO:0010646 regulation of cell communication IEP Predicted GO
BP GO:0015977 carbon fixation IEP Predicted GO
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
MF GO:0016746 transferase activity, transferring acyl groups IEP Predicted GO
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Predicted GO
BP GO:0016999 antibiotic metabolic process IEP Predicted GO
MF GO:0019899 enzyme binding IEP Predicted GO
BP GO:0023051 regulation of signaling IEP Predicted GO
CC GO:0030118 clathrin coat IEP Predicted GO
CC GO:0030125 clathrin vesicle coat IEP Predicted GO
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Predicted GO
CC GO:0030132 clathrin coat of coated pit IEP Predicted GO
BP GO:0032012 regulation of ARF protein signal transduction IEP Predicted GO
MF GO:0043015 gamma-tubulin binding IEP Predicted GO
CC GO:0044459 plasma membrane part IEP Predicted GO
BP GO:0046040 IMP metabolic process IEP Predicted GO
BP GO:0046578 regulation of Ras protein signal transduction IEP Predicted GO
BP GO:0048583 regulation of response to stimulus IEP Predicted GO
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Predicted GO
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Predicted GO
BP GO:0072350 tricarboxylic acid metabolic process IEP Predicted GO
CC GO:0098797 plasma membrane protein complex IEP Predicted GO
BP GO:1902531 regulation of intracellular signal transduction IEP Predicted GO
InterPro domains Description Start Stop
IPR010714 Coatomer_asu_C 818 1221
IPR006692 Coatomer_WD-assoc_reg 345 771
IPR001680 WD40_repeat 84 121
IPR001680 WD40_repeat 126 163
IPR001680 WD40_repeat 198 231
IPR001680 WD40_repeat 45 79
IPR001680 WD40_repeat 241 276
No external refs found!