Glyma.11G141600


Description : Histone superfamily protein


Gene families : OG_42_0000153 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000153_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.11G141600
Cluster HCCA clusters: Cluster_84

Target Alias Description ECC score Gene Family Method Actions
426757 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
A4A49_29058 No alias histone h2b 0.03 Orthogroups_2024-Update
A4A49_60323 No alias putative histone h2b.1 0.07 Orthogroups_2024-Update
At2g37470 No alias Histone H2B.4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUS0] 0.06 Orthogroups_2024-Update
At3g09480 No alias Histone H2B [Source:UniProtKB/TrEMBL;Acc:A0A178V4X7] 0.04 Orthogroups_2024-Update
At3g46030 No alias Histone H2B [Source:UniProtKB/TrEMBL;Acc:A0A178VGU6] 0.05 Orthogroups_2024-Update
At3g53650 No alias Histone H2B.8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFF6] 0.03 Orthogroups_2024-Update
At5g02570 No alias Histone H2B.9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZ45] 0.05 Orthogroups_2024-Update
At5g59910 No alias Histone H2B [Source:UniProtKB/TrEMBL;Acc:Q1H5F2] 0.05 Orthogroups_2024-Update
Bradi1g47980 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Brara.B01057.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
Brara.D00516.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
Brara.F01827.1 No alias histone *(H2B) 0.05 Orthogroups_2024-Update
Brara.I03652.1 No alias histone *(H2B) 0.06 Orthogroups_2024-Update
Brara.J01359.1 No alias histone *(H2B) 0.04 Orthogroups_2024-Update
Brara.J01445.1 No alias histone *(H2B) 0.04 Orthogroups_2024-Update
Cre06.g264800 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Cre06.g264900 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Cre06.g266750 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre06.g268250 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre06.g273850 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre06.g274250 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Cre06.g274750 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Cre06.g276550 No alias Histone superfamily protein 0.01 Orthogroups_2024-Update
Cre06.g276900 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre12.g504550 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre12.g504700 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Cre12.g505600 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre12.g506200 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Cre13.g570050 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre17.g708600 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Cre17.g711750 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G046841 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G141432 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G305027 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G306258 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
GRMZM2G401147 No alias Histone superfamily protein 0.06 Orthogroups_2024-Update
GRMZM2G472696 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Glyma.11G141700 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
HORVU1Hr1G056530.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
HORVU1Hr1G058440.4 No alias histone *(H2B) 0.02 Orthogroups_2024-Update
HORVU1Hr1G078480.6 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
HORVU1Hr1G085540.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
HORVU3Hr1G013530.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
HORVU4Hr1G009040.2 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
HORVU5Hr1G094500.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
Kfl01110_0020 kfl01110_0020_v1.... (p16868|h2b4_volca : 167.0) Histone H2B.4 (H2B-IV) -... 0.04 Orthogroups_2024-Update
LOC_Os01g06010 No alias Core histone H2A/H2B/H3/H4 domain containing protein,... 0.02 Orthogroups_2024-Update
LOC_Os08g38300 No alias Core histone H2A/H2B/H3/H4 domain containing protein,... 0.02 Orthogroups_2024-Update
Mp4g13450.1 No alias histone (H2B) 0.03 Orthogroups_2024-Update
Mp6g04070.1 No alias histone (H2B) 0.02 Orthogroups_2024-Update
Mp6g07010.1 No alias histone (H2B) 0.03 Orthogroups_2024-Update
Solyc02g038690 No alias Histone H2B (AHRD V3.3 *** K4B5W3_SOLLC) 0.07 Orthogroups_2024-Update
Solyc03g071620 No alias Histone H2B (AHRD V3.3 *** K4BHJ2_SOLLC) 0.06 Orthogroups_2024-Update
Solyc05g055440 No alias Histone H2B (AHRD V3.3 *** K4C2M0_SOLLC) 0.08 Orthogroups_2024-Update
Solyc06g005390 No alias Histone H2B (AHRD V3.3 *** K4C323_SOLLC) 0.08 Orthogroups_2024-Update
Solyc06g074780 No alias Histone H2B (AHRD V3.3 *** K4C9J5_SOLLC) 0.11 Orthogroups_2024-Update
Solyc06g074790 No alias Histone H2B (AHRD V3.3 *** M1AAN4_SOLTU) 0.08 Orthogroups_2024-Update
Solyc06g075800 No alias Histone H2B (AHRD V3.3 *** K4C9U5_SOLLC) 0.09 Orthogroups_2024-Update
Solyc11g007920 No alias Histone H2B (AHRD V3.3 *** K4D553_SOLLC) 0.09 Orthogroups_2024-Update
Solyc11g007930 No alias Histone H2B (AHRD V3.3 *** K4D554_SOLLC) 0.09 Orthogroups_2024-Update
Solyc11g066430 No alias histone H2B 0.13 Orthogroups_2024-Update
Solyc12g013510 No alias Histone H2B (AHRD V3.3 *** K4DCN6_SOLLC) 0.03 Orthogroups_2024-Update
Sopen03g019890 No alias Core histone H2A/H2B/H3/H4 0.08 Orthogroups_2024-Update
Sopen05g033890 No alias Core histone H2A/H2B/H3/H4 0.05 Orthogroups_2024-Update
Sopen06g031230 No alias Core histone H2A/H2B/H3/H4 0.05 Orthogroups_2024-Update
Sopen06g032230 No alias Core histone H2A/H2B/H3/H4 0.04 Orthogroups_2024-Update
Sopen11g003790 No alias Core histone H2A/H2B/H3/H4 0.07 Orthogroups_2024-Update
Sopen11g003800 No alias Core histone H2A/H2B/H3/H4 0.1 Orthogroups_2024-Update
Sopen11g026180 No alias Core histone H2A/H2B/H3/H4 0.07 Orthogroups_2024-Update
Sopen12g006850 No alias Core histone H2A/H2B/H3/H4 0.05 Orthogroups_2024-Update
evm.model.tig00000944.18 No alias (p16868|h2b4_volca : 122.0) Histone H2B.4 (H2B-IV) -... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
Type GO Term Name Evidence Source
BP GO:0000278 mitotic cell cycle IEP Predicted GO
CC GO:0000775 chromosome, centromeric region IEP Predicted GO
CC GO:0000796 condensin complex IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004797 thymidine kinase activity IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
BP GO:0006323 DNA packaging IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
BP GO:0007049 cell cycle IEP Predicted GO
BP GO:0007076 mitotic chromosome condensation IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0019136 deoxynucleoside kinase activity IEP Predicted GO
MF GO:0019205 nucleobase-containing compound kinase activity IEP Predicted GO
MF GO:0019206 nucleoside kinase activity IEP Predicted GO
BP GO:0022402 cell cycle process IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0030261 chromosome condensation IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
CC GO:0098687 chromosomal region IEP Predicted GO
BP GO:1903047 mitotic cell cycle process IEP Predicted GO
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 4 124
No external refs found!