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  5. Sopen09g035340

Sopen09g035340


Description : PPR repeat


Gene families : OG_42_0009458 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009458_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen09g035340
Cluster HCCA clusters: Cluster_225

Target Alias Description ECC score Gene Family Method Actions
At4g14050 No alias Pentatricopeptide repeat-containing protein At4g14050,... 0.03 Orthogroups_2024-Update
Bradi2g25180 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Brara.H00693.1 No alias RNA editing factor *(MEF35) 0.06 Orthogroups_2024-Update
HORVU1Hr1G064420.7 No alias RNA editing factor *(MEF35) 0.02 Orthogroups_2024-Update
PSME_00034108-RA No alias (at4g14050 : 588.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
Potri.001G321700 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Sobic.009G140400.1 No alias RNA editing factor *(MEF35) 0.02 Orthogroups_2024-Update
Solyc09g092440 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 256 303
IPR032867 DYW_dom 430 552
IPR002885 Pentatricopeptide_repeat 157 186
IPR002885 Pentatricopeptide_repeat 2 21
IPR002885 Pentatricopeptide_repeat 97 123
IPR002885 Pentatricopeptide_repeat 128 154
IPR002885 Pentatricopeptide_repeat 331 354
No external refs found!