Sopen09g035850

Description : S1 RNA binding domain

Gene families : OG_42_0008367 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008367_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen09g035850
Cluster	HCCA clusters: Cluster_76

Target	Alias	Description	ECC score	Gene Family Method
Bradi1g01880	No alias	Nucleic acid-binding proteins superfamily	0.02	Orthogroups_2024-Update
Cre03.g148950	No alias	Nucleic acid-binding proteins superfamily	0.02	Orthogroups_2024-Update
GRMZM2G016084	No alias	Nucleic acid-binding proteins superfamily	0.05	Orthogroups_2024-Update
Glyma.18G004100	No alias	Nucleic acid-binding proteins superfamily	0.02	Orthogroups_2024-Update
LOC_Os03g62780	No alias	S1 RNA binding domain containing protein, expressed	0.03	Orthogroups_2024-Update
Seita.9G014000.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Sobic.001G015200.1	No alias	Unknown function	0.04	Orthogroups_2024-Update
Solyc09g097910	No alias	30S ribosomal protein S1 (AHRD V3.3 *** W9RML0_9ROSA)	0.17	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003029	S1_domain	190	268

External Links

No external refs found!