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  5. Sopen10g001150

Sopen10g001150


Description : Ribonuclease III domain


Gene families : OG_42_0000292 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000292_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen10g001150
Cluster HCCA clusters: Cluster_113

Target Alias Description ECC score Gene Family Method Actions
A4A49_41176 No alias endoribonuclease dicer-like 2 0.03 Orthogroups_2024-Update
At5g20320 No alias Dicer-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:P84634] 0.03 Orthogroups_2024-Update
Bradi3g29287 No alias dicer-like 3 0.02 Orthogroups_2024-Update
Kfl00384_0060 kfl00384_0060_v1.1 (at1g01040 : 265.0) Encodes a Dicer homolog. Dicer is a... 0.04 Orthogroups_2024-Update
Pp1s30_297V6 No alias dicer-like protein 0.03 Orthogroups_2024-Update
Solyc11g008530 No alias Dicer-like 2d 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0004525 ribonuclease III activity IEA InterProScan predictions
MF GO:0005515 protein binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
BP GO:0006396 RNA processing IEA InterProScan predictions
MF GO:0016787 hydrolase activity IEA InterProScan predictions
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR005034 Dicer_dimerisation_dom 848 936
IPR014720 dsRBD_dom 1752 1810
IPR003100 PAZ_dom 1214 1349
IPR006935 Helicase/UvrB_N 256 420
IPR001650 Helicase_C 656 773
IPR000999 RNase_III_dom 1612 1725
IPR000999 RNase_III_dom 1386 1534
No external refs found!