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  5. Glyma.12G032500

Glyma.12G032500


Description : HEAT repeat ;HECT-domain (ubiquitin-transferase)


Gene families : OG_42_0001466 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001466_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.12G032500
Cluster HCCA clusters: Cluster_317

Target Alias Description ECC score Gene Family Method Actions
146155 No alias HEAT repeat ;HECT-domain (ubiquitin-transferase) 0.02 Orthogroups_2024-Update
A4A49_07184 No alias e3 ubiquitin-protein ligase upl4 0.03 Orthogroups_2024-Update
A4A49_28979 No alias e3 ubiquitin-protein ligase upl3 0.03 Orthogroups_2024-Update
At4g38600 No alias E3 ubiquitin-protein ligase UPL3... 0.03 Orthogroups_2024-Update
Bradi3g00350 No alias HEAT repeat ;HECT-domain (ubiquitin-transferase) 0.07 Orthogroups_2024-Update
Bradi5g04567 No alias HEAT repeat ;HECT-domain (ubiquitin-transferase) 0.02 Orthogroups_2024-Update
GRMZM2G374574 No alias HEAT repeat ;HECT-domain (ubiquitin-transferase) 0.06 Orthogroups_2024-Update
Glyma.06G003600 No alias HEAT repeat ;HECT-domain (ubiquitin-transferase) 0.06 Orthogroups_2024-Update
Glyma.13G136900 No alias ubiquitin-protein ligase 4 0.04 Orthogroups_2024-Update
Kfl00965_0030 kfl00965_0030_v1.1 (at4g38600 : 514.0) encodes a member of HECT ubiquitin... 0.03 Orthogroups_2024-Update
LOC_Os05g38830 No alias HECT-domain domain containing protein, expressed 0.03 Orthogroups_2024-Update
MA_10428377g0020 No alias (at4g38600 : 758.0) encodes a member of HECT ubiquitin... 0.08 Orthogroups_2024-Update
MA_140610g0010 No alias (at4g38600 : 1157.0) encodes a member of HECT ubiquitin... 0.06 Orthogroups_2024-Update
MA_62286g0020 No alias (at4g38600 : 823.0) encodes a member of HECT ubiquitin... 0.06 Orthogroups_2024-Update
Mp1g24750.1 No alias monomeric E3 ubiquitin ligase (HECT) 0.03 Orthogroups_2024-Update
PSME_00000237-RA No alias (at4g38600 : 1659.0) encodes a member of HECT ubiquitin... 0.05 Orthogroups_2024-Update
PSME_00002631-RA No alias (at4g38600 : 1949.0) encodes a member of HECT ubiquitin... 0.05 Orthogroups_2024-Update
PSME_00021195-RA No alias (at4g38600 : 1459.0) encodes a member of HECT ubiquitin... 0.08 Orthogroups_2024-Update
Seita.1G001500.1 No alias E3 ubiquitin ligase *(UPL3) 0.07 Orthogroups_2024-Update
Seita.3G213700.1 No alias E3 ubiquitin ligase *(UPL3) 0.03 Orthogroups_2024-Update
Seita.7G028700.1 No alias E3 ubiquitin ligase *(UPL3) 0.06 Orthogroups_2024-Update
Sobic.006G032300.1 No alias E3 ubiquitin ligase *(UPL3) 0.05 Orthogroups_2024-Update
Sopen10g025230 No alias HECT-domain (ubiquitin-transferase) 0.02 Orthogroups_2024-Update
evm.model.tig00020554.37 No alias (at4g38600 : 309.0) encodes a member of HECT ubiquitin... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
MF GO:0004645 phosphorylase activity IEP Predicted GO
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Predicted GO
MF GO:0004813 alanine-tRNA ligase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
BP GO:0005985 sucrose metabolic process IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0006419 alanyl-tRNA aminoacylation IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0008184 glycogen phosphorylase activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016157 sucrose synthase activity IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
CC GO:0030119 AP-type membrane coat adaptor complex IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
CC GO:0030131 clathrin adaptor complex IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
BP GO:0043631 RNA polyadenylation IEP Predicted GO
BP GO:0044265 cellular macromolecule catabolic process IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0048193 Golgi vesicle transport IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
MF GO:0070566 adenylyltransferase activity IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
MF GO:2001070 starch binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000569 HECT_dom 1504 1877
No external refs found!