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  5. Glyma.12G056300

Glyma.12G056300


Description : Integrase-type DNA-binding superfamily protein


Gene families : OG_42_0000060 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000060_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.12G056300

Target Alias Description ECC score Gene Family Method Actions
At3g54320 No alias Integrase-type DNA-binding superfamily protein... 0.04 Orthogroups_2024-Update
Glyma.10G116600 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Glyma.13G096900 No alias AINTEGUMENTA-like 5 0.03 Orthogroups_2024-Update
Glyma.15G221600 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Glyma.18G148000 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
PSME_00040180-RA No alias (at2g41710 : 242.0) Integrase-type DNA-binding... 0.06 Orthogroups_2024-Update
Potri.007G046200 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Potri.008G011900 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Pp1s131_139V6 No alias ap2 domain-containing transcription factor 0.02 Orthogroups_2024-Update
Seita.5G356300.1 No alias AP2-type transcription factor *(WRI/AIL) 0.04 Orthogroups_2024-Update
Seita.9G482500.1 No alias AP2-type transcription factor *(WRI/AIL) 0.03 Orthogroups_2024-Update
Seita.9G520500.1 No alias AP2-type transcription factor *(WRI/AIL) 0.02 Orthogroups_2024-Update
Sobic.005G021000.1 No alias AP2-type transcription factor *(WRI/AIL) 0.04 Orthogroups_2024-Update
Solyc02g064960 No alias APETALA2b 0.04 Orthogroups_2024-Update
Solyc10g084340 No alias AP2-like ethylene-responsive transcription factor (AHRD... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA InterProScan predictions
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0004190 aspartic-type endopeptidase activity IEP Predicted GO
MF GO:0004601 peroxidase activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006979 response to oxidative stress IEP Predicted GO
MF GO:0016209 antioxidant activity IEP Predicted GO
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
MF GO:0070001 aspartic-type peptidase activity IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
InterPro domains Description Start Stop
IPR001471 AP2/ERF_dom 267 322
IPR001471 AP2/ERF_dom 164 222
No external refs found!