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  5. Glyma.12G073200

Glyma.12G073200


Description : RNA binding (RRM/RBD/RNP motifs) family protein


Gene families : OG_42_0002171 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002171_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.12G073200
Cluster HCCA clusters: Cluster_244

Target Alias Description ECC score Gene Family Method Actions
A4A49_61093 No alias hypothetical protein 0.04 Orthogroups_2024-Update
At2g28540 No alias RNA binding (RRM/RBD/RNP motifs) family protein... 0.03 Orthogroups_2024-Update
At3g45630 No alias RNA binding (RRM/RBD/RNP motifs) family protein... 0.06 Orthogroups_2024-Update
At5g60170 No alias RNA binding (RRM/RBD/RNP motifs) family protein... 0.03 Orthogroups_2024-Update
Bradi4g45240 No alias RNA binding (RRM/RBD/RNP motifs) family protein 0.06 Orthogroups_2024-Update
GRMZM2G146267 No alias RNA binding (RRM/RBD/RNP motifs) family protein 0.02 Orthogroups_2024-Update
Glyma.10G048700 No alias RNA binding (RRM/RBD/RNP motifs) family protein 0.04 Orthogroups_2024-Update
Potri.006G132300 No alias RNA binding (RRM/RBD/RNP motifs) family protein 0.03 Orthogroups_2024-Update
Potri.009G026200 No alias RNA binding (RRM/RBD/RNP motifs) family protein 0.03 Orthogroups_2024-Update
Potri.016G084700 No alias RNA binding (RRM/RBD/RNP motifs) family protein 0.03 Orthogroups_2024-Update
Seita.6G218200.1 No alias component *(NOT4) of mRNA deadenylation CCR4-NOT complex 0.03 Orthogroups_2024-Update
Seita.6G218300.1 No alias component *(NOT4) of mRNA deadenylation CCR4-NOT complex 0.04 Orthogroups_2024-Update
Sobic.003G022900.1 No alias component *(NOT4) of mRNA deadenylation CCR4-NOT complex 0.02 Orthogroups_2024-Update
evm.model.tig00001065.17 No alias (at5g60170 : 186.0) RNA binding (RRM/RBD/RNP motifs)... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Predicted GO
MF GO:0004645 phosphorylase activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
MF GO:0005543 phospholipid binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005779 integral component of peroxisomal membrane IEP Predicted GO
BP GO:0006508 proteolysis IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
MF GO:0008184 glycogen phosphorylase activity IEP Predicted GO
MF GO:0008289 lipid binding IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
BP GO:0016559 peroxisome fission IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
CC GO:0030119 AP-type membrane coat adaptor complex IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
CC GO:0030131 clathrin adaptor complex IEP Predicted GO
CC GO:0031231 intrinsic component of peroxisomal membrane IEP Predicted GO
CC GO:0031300 intrinsic component of organelle membrane IEP Predicted GO
CC GO:0031301 integral component of organelle membrane IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
CC GO:0044438 microbody part IEP Predicted GO
CC GO:0044439 peroxisomal part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
MF GO:0048038 quinone binding IEP Predicted GO
BP GO:0048285 organelle fission IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 112 190
No external refs found!