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  5. Glyma.12G096700

Glyma.12G096700


Description : Function unknown


Gene families : OG_42_0005780 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005780_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.12G096700
Cluster HCCA clusters: Cluster_301

Target Alias Description ECC score Gene Family Method Actions
Brara.E01156.1 No alias component *(CAP-H) of condensin I complex 0.05 Orthogroups_2024-Update
Solyc07g049680 No alias Condensin complex subunit 2 (AHRD V3.3 *** A0A022R1C5_ERYGU) 0.04 Orthogroups_2024-Update
Sopen07g025100 No alias Condensin complex subunit 2 0.04 Orthogroups_2024-Update
evm.model.contig_3435.8 No alias (at2g32590 : 195.0) LOCATED IN: chloroplast; EXPRESSED... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000796 condensin complex IEA InterProScan predictions
BP GO:0007076 mitotic chromosome condensation IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016597 amino acid binding IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
MF GO:0031406 carboxylic acid binding IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
MF GO:0043177 organic acid binding IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR022816 Condensin_barren_su2 25 520
IPR022816 Condensin_barren_su2 547 656
No external refs found!