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  5. Sopen10g002800

Sopen10g002800


Description : WD domain, G-beta repeat


Gene families : OG_42_0000437 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000437_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen10g002800
Cluster HCCA clusters: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
A4A49_40501 No alias compass-like h3k4 histone methylase component wdr5a 0.03 Orthogroups_2024-Update
GRMZM2G055437 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G420469 No alias Transducin/WD40 repeat-like superfamily protein 0.02 Orthogroups_2024-Update
LOC_Os04g44700 No alias WD-40 repeat family protein, putative, expressed 0.03 Orthogroups_2024-Update
Mp7g16950.1 No alias COMPASS-like H3K4 histone methylase component WDR5A... 0.02 Orthogroups_2024-Update
Potri.005G057600 No alias Transducin/WD40 repeat-like superfamily protein 0.02 Orthogroups_2024-Update
Pp1s219_28V6 No alias MJK13.13; WD-40 repeat family protein [Arabidopsis thaliana] 0.03 Orthogroups_2024-Update
Pp1s312_42V6 No alias MJK13.13; WD-40 repeat family protein [Arabidopsis thaliana] 0.04 Orthogroups_2024-Update
Seita.7G176800.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc08g008490 No alias WD-repeat protein, putative (AHRD V3.3 *** B9RYR0_RICCO) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001680 WD40_repeat 394 425
IPR001680 WD40_repeat 679 715
IPR001680 WD40_repeat 543 580
IPR001680 WD40_repeat 502 537
No external refs found!