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  5. Glyma.12G215900

Glyma.12G215900


Description : Translation protein SH3-like family protein


Gene families : OG_42_0005677 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005677_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.12G215900
Cluster HCCA clusters: Cluster_212

Target Alias Description ECC score Gene Family Method Actions
A4A49_64410 No alias 50s ribosomal protein l24, chloroplastic 0.06 Orthogroups_2024-Update
Bradi1g33030 No alias Translation protein SH3-like family protein 0.04 Orthogroups_2024-Update
Brara.J00929.1 No alias component *(uL24c) of large plastid ribosomal-subunit proteome 0.04 Orthogroups_2024-Update
Cre16.g652550 No alias Translation protein SH3-like family protein 0.06 Orthogroups_2024-Update
HORVU7Hr1G101810.1 No alias component *(uL24c) of large plastid ribosomal-subunit proteome 0.05 Orthogroups_2024-Update
Potri.001G415400 No alias Translation protein SH3-like family protein 0.03 Orthogroups_2024-Update
Pp1s24_126V6 No alias ribosomal protein l24 0.02 Orthogroups_2024-Update
Seita.4G255700.1 No alias component *(uL24c) of large plastid ribosomal-subunit proteome 0.04 Orthogroups_2024-Update
Sobic.010G233800.1 No alias component *(uL24c) of large plastid ribosomal-subunit proteome 0.06 Orthogroups_2024-Update
Solyc07g063960 No alias 50S ribosomal protein L24, chloroplastic (AHRD V3.3 ***... 0.05 Orthogroups_2024-Update
Sopen07g032100 No alias KOW motif 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0004298 threonine-type endopeptidase activity IEP Predicted GO
CC GO:0005839 proteasome core complex IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Predicted GO
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
MF GO:0033743 peptide-methionine (R)-S-oxide reductase activity IEP Predicted GO
MF GO:0070003 threonine-type peptidase activity IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR003256 Ribosomal_L24 106 170
IPR005824 KOW 74 104
No external refs found!