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  5. Glyma.12G216300

Glyma.12G216300


Description : organic cation/carnitine transporter4


Gene families : OG_42_0002359 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002359_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.12G216300
Cluster HCCA clusters: Gene familiesCluster_159

Target Alias Description ECC score Gene Family Method Actions
Glyma.16G216500 No alias organic cation/carnitine transporter1 0.04 Orthogroups_2024-Update
LOC_Os04g53930 No alias organic cation transporter protein, putative, expressed 0.03 Orthogroups_2024-Update
MA_6288g0010 No alias (at1g73220 : 483.0) organic cation/carnitine... 0.03 Orthogroups_2024-Update
PSME_00055356-RA No alias (at3g20660 : 434.0) organic cation/carnitine... 0.03 Orthogroups_2024-Update
Potri.012G037400 No alias organic cation/carnitine transporter1 0.04 Orthogroups_2024-Update
Seita.7G249900.1 No alias organic cation transporter *(OCT) 0.03 Orthogroups_2024-Update
Solyc07g063920 No alias Organic cation transporter, putative (AHRD V3.3 *** B9SY49_RICCO) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0016021 integral component of membrane IEA InterProScan predictions
MF GO:0022857 transmembrane transporter activity IEA InterProScan predictions
BP GO:0055085 transmembrane transport IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Predicted GO
MF GO:0004888 transmembrane signaling receptor activity IEP Predicted GO
MF GO:0004970 ionotropic glutamate receptor activity IEP Predicted GO
MF GO:0005230 extracellular ligand-gated ion channel activity IEP Predicted GO
CC GO:0005875 microtubule associated complex IEP Predicted GO
BP GO:0006814 sodium ion transport IEP Predicted GO
MF GO:0008066 glutamate receptor activity IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
MF GO:0022824 transmitter-gated ion channel activity IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0022835 transmitter-gated channel activity IEP Predicted GO
MF GO:0022836 gated channel activity IEP Predicted GO
MF GO:0022839 ion gated channel activity IEP Predicted GO
MF GO:0030246 carbohydrate binding IEP Predicted GO
MF GO:0030247 polysaccharide binding IEP Predicted GO
CC GO:0030286 dynein complex IEP Predicted GO
MF GO:0030594 neurotransmitter receptor activity IEP Predicted GO
MF GO:0038023 signaling receptor activity IEP Predicted GO
MF GO:0060089 molecular transducer activity IEP Predicted GO
MF GO:2001070 starch binding IEP Predicted GO
InterPro domains Description Start Stop
IPR005828 MFS_sugar_transport-like 17 305
No external refs found!