Sopen10g003680

Description : RNA recognition motif 2

Gene families : OG_42_0001046 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001046_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen10g003680
Cluster	HCCA clusters: Cluster_119

Target	Alias	Description	ECC score	Gene Family Method
Brara.I02886.1	No alias	Unknown function	0.04	Orthogroups_2024-Update
Glyma.18G106900	No alias	MEI2-like protein 5	0.02	Orthogroups_2024-Update
LOC_Os05g01240	No alias	AML1, putative, expressed	0.03	Orthogroups_2024-Update
Seita.1G173300.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Sobic.009G001300.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Solyc07g056340	No alias	RNA-binding protein, putative (AHRD V3.3 *** B9T754_RICCO)	0.03	Orthogroups_2024-Update
Solyc10g007770	No alias	RNA-binding protein, putative (AHRD V3.3 *** B9T754_RICCO)	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	278	343
IPR000504	RRM_dom	193	257
IPR007201	Mei2-like_Rrm_C	685	781

External Links

No external refs found!