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  5. Glyma.13G062800

Glyma.13G062800


Description : structural maintenance of chromosome 3


Gene families : OG_42_0006183 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006183_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.13G062800
Cluster HCCA clusters: Cluster_477

Target Alias Description ECC score Gene Family Method Actions
Cre12.g493400 No alias structural maintenance of chromosome 3 0.03 Orthogroups_2024-Update
Kfl00411_0100 kfl00411_0100_v1.1 (at5g48600 : 1014.0) member of SMC subfamily; structural... 0.01 Orthogroups_2024-Update
MA_317249g0010 No alias (at5g48600 : 395.0) member of SMC subfamily; structural... 0.03 Orthogroups_2024-Update
Solyc02g087980 No alias Structural maintenance of chromosomes protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Sopen02g032720 No alias RecF/RecN/SMC N terminal domain 0.03 Orthogroups_2024-Update
evm.model.contig_3558.6 No alias (at5g48600 : 612.0) member of SMC subfamily; structural... 0.03 Orthogroups_2024-Update
evm.model.tig00000711.41 No alias (at5g48600 : 304.0) member of SMC subfamily; structural... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
CC GO:0005694 chromosome IEA InterProScan predictions
BP GO:0051276 chromosome organization IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR010935 SMC_hinge 554 670
IPR003395 RecF/RecN/SMC_N 24 1226
No external refs found!