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  5. Glyma.13G067800

Glyma.13G067800


Description : SIN3-like 2


Gene families : OG_42_0000363 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000363_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.13G067800
Cluster HCCA clusters: Cluster_286

Target Alias Description ECC score Gene Family Method Actions
At1g24190 No alias SIN3-like 3 [Source:TAIR;Acc:AT1G24190] 0.03 Orthogroups_2024-Update
At3g01320 No alias Paired amphipathic helix protein Sin3-like 1... 0.04 Orthogroups_2024-Update
Bradi2g00860 No alias SIN3-like 4 0.06 Orthogroups_2024-Update
Bradi2g40052 No alias SIN3-like 4 0.05 Orthogroups_2024-Update
GRMZM2G334457 No alias SIN3-like 4 0.03 Orthogroups_2024-Update
Kfl00311_0140 kfl00311_0140_v1.1 (at5g15020 : 616.0) Encodes a homolog of the... 0.03 Orthogroups_2024-Update
Potri.008G192200 No alias SIN3-like 4 0.04 Orthogroups_2024-Update
Seita.3G117100.1 No alias component *(SNL) of histone deacetylase machineries 0.05 Orthogroups_2024-Update
Seita.5G073400.1 No alias component *(SNL) of histone deacetylase machineries 0.04 Orthogroups_2024-Update
Sobic.003G101400.1 No alias component *(SNL) of histone deacetylase machineries 0.03 Orthogroups_2024-Update
Sopen02g032110 No alias Paired amphipathic helix repeat 0.02 Orthogroups_2024-Update
evm.model.tig00001155.28 No alias (at3g01320 : 124.0) Encodes SIN3-like 1, a homolog of... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0004133 glycogen debranching enzyme activity IEP Predicted GO
MF GO:0004134 4-alpha-glucanotransferase activity IEP Predicted GO
MF GO:0004176 ATP-dependent peptidase activity IEP Predicted GO
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Predicted GO
MF GO:0004721 phosphoprotein phosphatase activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0008037 cell recognition IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0008716 D-alanine-D-alanine ligase activity IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0015985 energy coupled proton transport, down electrochemical gradient IEP Predicted GO
BP GO:0015986 ATP synthesis coupled proton transport IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
BP GO:0016311 dephosphorylation IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016881 acid-amino acid ligase activity IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
BP GO:0022414 reproductive process IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
CC GO:0030119 AP-type membrane coat adaptor complex IEP Predicted GO
CC GO:0030131 clathrin adaptor complex IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0043631 RNA polyadenylation IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0048544 recognition of pollen IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
MF GO:0070566 adenylyltransferase activity IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
MF GO:2001070 starch binding IEP Predicted GO
InterPro domains Description Start Stop
IPR003822 PAH 77 121
IPR003822 PAH 162 205
IPR003822 PAH 346 389
IPR013194 HDAC_interact_dom 458 549
IPR031693 Sin3_C 1092 1339
No external refs found!