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  5. Sopen10g004170

Sopen10g004170


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000008 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen10g004170
Cluster HCCA clusters: Cluster_184

Target Alias Description ECC score Gene Family Method Actions
MpVg00320.1 No alias No annotation 0.02 Orthogroups_2024-Update
Sopen06g004750 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen06g014970 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
evm.model.contig_3644.2 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
evm.model.contig_3718.1 No alias (p10978|polx_tobac : 570.0) Retrovirus-related Pol... 0.02 Orthogroups_2024-Update
evm.model.contig_4508.4 No alias (p10978|polx_tobac : 387.0) Retrovirus-related Pol... 0.02 Orthogroups_2024-Update
evm.model.contig_4533.1 No alias (p10978|polx_tobac : 122.0) Retrovirus-related Pol... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
BP GO:0015074 DNA integration IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001584 Integrase_cat-core 574 686
IPR001878 Znf_CCHC 327 343
IPR025724 GAG-pre-integrase_dom 489 556
IPR013103 RVT_2 924 1168
No external refs found!