Glyma.13G140600

Description : auxin response factor 16

Gene families : OG_42_0000050 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000050_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Glycine release: Glyma.13G140600
Cluster	HCCA clusters: Cluster_73

Target	Alias	Description	ECC score	Gene Family Method
A4A49_18150	No alias	auxin response factor 8	0.04	Orthogroups_2024-Update
A4A49_21432	No alias	auxin response factor 10	0.02	Orthogroups_2024-Update
A4A49_26861	No alias	auxin response factor 18	0.03	Orthogroups_2024-Update
At1g34310	No alias	Auxin response factor 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9XID4]	0.02	Orthogroups_2024-Update
Bradi3g04920	No alias	auxin response factor 6	0.03	Orthogroups_2024-Update
Bradi5g25157	No alias	Transcriptional factor B3 family protein /...	0.03	Orthogroups_2024-Update
Brara.E00126.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Brara.G01369.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Brara.I00250.1	No alias	ARF-type transcription factor	0.02	Orthogroups_2024-Update
Brara.I00676.1	No alias	ARF-type transcription factor	0.04	Orthogroups_2024-Update
Brara.K00855.1	No alias	ARF-type transcription factor	0.02	Orthogroups_2024-Update
GRMZM2G081158	No alias	auxin response factor 6	0.03	Orthogroups_2024-Update
GRMZM2G081406	No alias	auxin response factor 16	0.03	Orthogroups_2024-Update
GRMZM2G102845	No alias	Transcriptional factor B3 family protein /...	0.04	Orthogroups_2024-Update
Glyma.08G027800	No alias	Transcriptional factor B3 family protein /...	0.03	Orthogroups_2024-Update
Glyma.11G204200	No alias	auxin response factor 8	0.02	Orthogroups_2024-Update
Glyma.13G084700	No alias	auxin response factor 17	0.04	Orthogroups_2024-Update
Glyma.15G091000	No alias	auxin response factor 8	0.04	Orthogroups_2024-Update
HORVU2Hr1G125740.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
HORVU7Hr1G033820.2	No alias	Unknown function	0.02	Orthogroups_2024-Update
LOC_Os11g32110	No alias	auxin response factor, putative, expressed	0.03	Orthogroups_2024-Update
Mp4g11820.1	No alias	transcription factor (ARF)	0.02	Orthogroups_2024-Update
Pp1s341_4V6	No alias	arf1-binding protein	0.03	Orthogroups_2024-Update
Pp1s64_138V6	No alias	arf1-binding protein	0.02	Orthogroups_2024-Update
Seita.1G090900.1	No alias	ARF-type transcription factor & auxin signal mediator...	0.04	Orthogroups_2024-Update
Seita.1G195500.1	No alias	ARF-type transcription factor	0.06	Orthogroups_2024-Update
Seita.5G438100.1	No alias	ARF-type transcription factor	0.04	Orthogroups_2024-Update
Seita.8G135700.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Sobic.002G290600.1	No alias	ARF-type transcription factor	0.02	Orthogroups_2024-Update
Sobic.003G251700.1	No alias	ARF-type transcription factor	0.05	Orthogroups_2024-Update
Solyc04g081240	No alias	No description available	0.03	Orthogroups_2024-Update
Solyc11g013480	No alias	Auxin Response Factor 17	0.03	Orthogroups_2024-Update
Sopen01g039790	No alias	AUX/IAA family	0.03	Orthogroups_2024-Update
Sopen03g005820	No alias	Auxin response factor	0.03	Orthogroups_2024-Update
Sopen08g004260	No alias	Auxin response factor	0.05	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan predictions
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	InterProScan predictions
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0001871	pattern binding	IEP	Predicted GO
BP	GO:0002376	immune system process	IEP	Predicted GO
MF	GO:0005216	ion channel activity	IEP	Predicted GO
MF	GO:0005244	voltage-gated ion channel activity	IEP	Predicted GO
MF	GO:0005247	voltage-gated chloride channel activity	IEP	Predicted GO
MF	GO:0005253	anion channel activity	IEP	Predicted GO
MF	GO:0005254	chloride channel activity	IEP	Predicted GO
BP	GO:0006820	anion transport	IEP	Predicted GO
BP	GO:0006821	chloride transport	IEP	Predicted GO
BP	GO:0006952	defense response	IEP	Predicted GO
BP	GO:0006955	immune response	IEP	Predicted GO
MF	GO:0008308	voltage-gated anion channel activity	IEP	Predicted GO
MF	GO:0008509	anion transmembrane transporter activity	IEP	Predicted GO
MF	GO:0015103	inorganic anion transmembrane transporter activity	IEP	Predicted GO
MF	GO:0015108	chloride transmembrane transporter activity	IEP	Predicted GO
BP	GO:0015698	inorganic anion transport	IEP	Predicted GO
MF	GO:0022832	voltage-gated channel activity	IEP	Predicted GO
MF	GO:0022836	gated channel activity	IEP	Predicted GO
MF	GO:0022838	substrate-specific channel activity	IEP	Predicted GO
MF	GO:0022839	ion gated channel activity	IEP	Predicted GO
MF	GO:0030246	carbohydrate binding	IEP	Predicted GO
MF	GO:0030247	polysaccharide binding	IEP	Predicted GO
BP	GO:0045087	innate immune response	IEP	Predicted GO
MF	GO:2001070	starch binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	117	218
IPR010525	Auxin_resp	286	369

External Links

No external refs found!

Glyma.13G140600

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation