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  5. Glyma.13G145200

Glyma.13G145200


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG_42_0002384 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002384_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.13G145200
Cluster HCCA clusters: Cluster_342

Target Alias Description ECC score Gene Family Method Actions
At2g37220 No alias RNA-binding protein CP29B, chloroplastic... 0.04 Orthogroups_2024-Update
Bradi1g20440 No alias chloroplast RNA-binding protein 29 0.06 Orthogroups_2024-Update
Bradi1g61250 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.05 Orthogroups_2024-Update
Brara.C01867.1 No alias plastidial ribonucleoprotein *(CP29) 0.03 Orthogroups_2024-Update
Brara.E00783.1 No alias plastidial ribonucleoprotein *(CP29) 0.04 Orthogroups_2024-Update
Brara.G01591.1 No alias plastidial ribonucleoprotein *(CP29) 0.03 Orthogroups_2024-Update
GRMZM2G068715 No alias chloroplast RNA-binding protein 29 0.04 Orthogroups_2024-Update
GRMZM2G158835 No alias chloroplast RNA-binding protein 29 0.05 Orthogroups_2024-Update
HORVU4Hr1G048440.1 No alias plastidial ribonucleoprotein *(CP29) 0.04 Orthogroups_2024-Update
Potri.006G127200 No alias chloroplast RNA-binding protein 29 0.03 Orthogroups_2024-Update
Potri.016G090700 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.07 Orthogroups_2024-Update
Pp1s260_6V6 No alias 29 kDa ribonucleoprotein A, chloroplast precursor... 0.02 Orthogroups_2024-Update
Pp1s91_60V6 No alias ribonucleoprotein a 0.02 Orthogroups_2024-Update
Seita.9G388600.1 No alias plastidial ribonucleoprotein *(CP29) 0.04 Orthogroups_2024-Update
Sobic.001G357200.1 No alias plastidial ribonucleoprotein *(CP29) 0.04 Orthogroups_2024-Update
Sobic.002G386400.1 No alias plastidial ribonucleoprotein *(CP29) 0.03 Orthogroups_2024-Update
Solyc10g086150 No alias RNA-binding (RRM/RBD/RNP motifs) family protein (AHRD... 0.03 Orthogroups_2024-Update
Sopen09g002690 No alias RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.06 Orthogroups_2024-Update
Sopen10g035530 No alias RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000295 adenine nucleotide transmembrane transporter activity IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
MF GO:0005346 purine ribonucleotide transmembrane transporter activity IEP Predicted GO
MF GO:0005347 ATP transmembrane transporter activity IEP Predicted GO
MF GO:0005471 ATP:ADP antiporter activity IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006862 nucleotide transport IEP Predicted GO
MF GO:0008514 organic anion transmembrane transporter activity IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0010035 response to inorganic substance IEP Predicted GO
BP GO:0010038 response to metal ion IEP Predicted GO
MF GO:0015215 nucleotide transmembrane transporter activity IEP Predicted GO
MF GO:0015216 purine nucleotide transmembrane transporter activity IEP Predicted GO
MF GO:0015217 ADP transmembrane transporter activity IEP Predicted GO
MF GO:0015301 anion:anion antiporter activity IEP Predicted GO
MF GO:0015605 organophosphate ester transmembrane transporter activity IEP Predicted GO
BP GO:0015748 organophosphate ester transport IEP Predicted GO
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Predicted GO
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Predicted GO
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
MF GO:0099516 ion antiporter activity IEP Predicted GO
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 198 268
IPR000504 RRM_dom 91 161
No external refs found!