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Description : Pectin lyase-like superfamily protein
Gene families : OG_42_0000086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000086_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Glycine release: Glyma.13G145900 | |
| Cluster | HCCA clusters: Cluster_263 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| A4A49_26358 | No alias | putative pectate lyase p18 | 0.06 | Orthogroups_2024-Update | |
| A4A49_40716 | No alias | putative pectate lyase 16 | 0.04 | Orthogroups_2024-Update | |
| At1g67750 | No alias | Probable pectate lyase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXD8] | 0.04 | Orthogroups_2024-Update | |
| At3g01270 | No alias | Pectate lyase [Source:UniProtKB/TrEMBL;Acc:Q08A70] | 0.03 | Orthogroups_2024-Update | |
| At3g07010 | No alias | Probable pectate lyase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8Z8] | 0.03 | Orthogroups_2024-Update | |
| Brara.B00588.1 | No alias | pectate lyase & EC_4.2 carbon-oxygen lyase | 0.03 | Orthogroups_2024-Update | |
| Brara.C00647.1 | No alias | pectate lyase & EC_4.2 carbon-oxygen lyase | 0.05 | Orthogroups_2024-Update | |
| Brara.F00890.1 | No alias | pectate lyase & EC_4.2 carbon-oxygen lyase | 0.03 | Orthogroups_2024-Update | |
| Brara.F02217.1 | No alias | pectate lyase & EC_4.2 carbon-oxygen lyase | 0.03 | Orthogroups_2024-Update | |
| Brara.I00410.1 | No alias | pectate lyase & EC_4.2 carbon-oxygen lyase | 0.03 | Orthogroups_2024-Update | |
| Glyma.08G296900 | No alias | Pectate lyase family protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.17G011200 | No alias | Pectin lyase-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Glyma.18G175300 | No alias | Pectin lyase-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| LOC_Os10g31910 | No alias | pectate lyase precursor, putative, expressed | 0.02 | Orthogroups_2024-Update | |
| PSME_00009672-RA | No alias | (at5g48900 : 608.0) Pectin lyase-like superfamily... | 0.03 | Orthogroups_2024-Update | |
| PSME_00017512-RA | No alias | (at4g24780 : 545.0) Pectin lyase-like superfamily... | 0.04 | Orthogroups_2024-Update | |
| PSME_00020782-RA | No alias | (at5g63180 : 492.0) Pectin lyase-like superfamily... | 0.03 | Orthogroups_2024-Update | |
| PSME_00032290-RA | No alias | (at4g24780 : 602.0) Pectin lyase-like superfamily... | 0.03 | Orthogroups_2024-Update | |
| Potri.001G339500 | No alias | Pectin lyase-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Potri.011G093400 | No alias | Pectin lyase-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Pp1s355_16V6 | No alias | pectate lyase | 0.03 | Orthogroups_2024-Update | |
| Pp1s84_82V6 | No alias | pectate lyase | 0.02 | Orthogroups_2024-Update | |
| Sobic.003G322800.1 | No alias | pectate lyase & EC_4.2 carbon-oxygen lyase | 0.03 | Orthogroups_2024-Update | |
| Sobic.004G091000.1 | No alias | pectate lyase & EC_4.2 carbon-oxygen lyase | 0.03 | Orthogroups_2024-Update | |
| Sobic.010G034200.1 | No alias | pectate lyase & EC_4.2 carbon-oxygen lyase | 0.03 | Orthogroups_2024-Update | |
| Solyc02g067450 | No alias | Pectate lyase (AHRD V3.3 *** M1A9L8_SOLTU) | 0.04 | Orthogroups_2024-Update | |
| Sopen01g006390 | No alias | Pectate lyase | 0.03 | Orthogroups_2024-Update | |
| Sopen02g032420 | No alias | Pectate lyase | 0.03 | Orthogroups_2024-Update | |
| Sopen03g012780 | No alias | Pectate lyase | 0.03 | Orthogroups_2024-Update | |
| Sopen03g032210 | No alias | Pectate lyase | 0.03 | Orthogroups_2024-Update | |
| Sopen06g034960 | No alias | Pectate lyase | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000151 | ubiquitin ligase complex | IEP | Predicted GO |
| CC | GO:0000152 | nuclear ubiquitin ligase complex | IEP | Predicted GO |
| CC | GO:0005680 | anaphase-promoting complex | IEP | Predicted GO |
| BP | GO:0007088 | regulation of mitotic nuclear division | IEP | Predicted GO |
| BP | GO:0007346 | regulation of mitotic cell cycle | IEP | Predicted GO |
| BP | GO:0010564 | regulation of cell cycle process | IEP | Predicted GO |
| BP | GO:0010965 | regulation of mitotic sister chromatid separation | IEP | Predicted GO |
| BP | GO:0030071 | regulation of mitotic metaphase/anaphase transition | IEP | Predicted GO |
| CC | GO:0031461 | cullin-RING ubiquitin ligase complex | IEP | Predicted GO |
| BP | GO:0033043 | regulation of organelle organization | IEP | Predicted GO |
| BP | GO:0033044 | regulation of chromosome organization | IEP | Predicted GO |
| BP | GO:0033045 | regulation of sister chromatid segregation | IEP | Predicted GO |
| BP | GO:0033047 | regulation of mitotic sister chromatid segregation | IEP | Predicted GO |
| BP | GO:0051128 | regulation of cellular component organization | IEP | Predicted GO |
| BP | GO:0051726 | regulation of cell cycle | IEP | Predicted GO |
| BP | GO:0051783 | regulation of nuclear division | IEP | Predicted GO |
| BP | GO:0051983 | regulation of chromosome segregation | IEP | Predicted GO |
| BP | GO:1901987 | regulation of cell cycle phase transition | IEP | Predicted GO |
| BP | GO:1901990 | regulation of mitotic cell cycle phase transition | IEP | Predicted GO |
| BP | GO:1902099 | regulation of metaphase/anaphase transition of cell cycle | IEP | Predicted GO |
| BP | GO:1905818 | regulation of chromosome separation | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002022 | Pec_lyase | 153 | 322 |
| No external refs found! |