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  5. Glyma.13G150300

Glyma.13G150300


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.13G150300
Cluster HCCA clusters: Cluster_129

Target Alias Description ECC score Gene Family Method Actions
118828 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
119022 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
399 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
79732 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
A4A49_25971 No alias pentatricopeptide repeat-containing protein 0.03 Orthogroups_2024-Update
A4A49_26813 No alias putative pentatricopeptide repeat-containing protein,... 0.03 Orthogroups_2024-Update
At2g41080 No alias Pentatricopeptide repeat-containing protein At2g41080... 0.04 Orthogroups_2024-Update
At3g16610 No alias Pentatricopeptide repeat-containing protein At3g16610... 0.03 Orthogroups_2024-Update
At3g23330 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Orthogroups_2024-Update
At3g25060 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Orthogroups_2024-Update
At5g13270 No alias Pentatricopeptide repeat-containing protein At5g13270,... 0.03 Orthogroups_2024-Update
At5g56310 No alias Pentatricopeptide repeat-containing protein At5g56310... 0.04 Orthogroups_2024-Update
Brara.A00474.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.A02193.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.B03211.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G030148 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G045154 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G158839 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G161368 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G320723 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G462417 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.04G203500 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.05G026400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.08G289802 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.09G088000 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.09G283000 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.12G102800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.15G093800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.16G172800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
Glyma.18G275000 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.18G288100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
HORVU1Hr1G090780.5 No alias RNA editing factor *(ECB2/VAC1) 0.03 Orthogroups_2024-Update
HORVU2Hr1G027440.18 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU2Hr1G035300.1 No alias RNA editing factor *(OTP90) 0.05 Orthogroups_2024-Update
HORVU3Hr1G026110.4 No alias RNA editing factor *(DOT4) 0.02 Orthogroups_2024-Update
LOC_Os03g11700 No alias pentatricopeptide repeat domain containing protein,... 0.02 Orthogroups_2024-Update
LOC_Os05g30710 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os07g39910 No alias pentatricopeptide repeat domain containing protein,... 0.03 Orthogroups_2024-Update
LOC_Os08g40020 No alias selenium binding protein, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os09g24680 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
MA_25515g0010 No alias (at4g13650 : 660.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
PSME_00004138-RA No alias (at1g11290 : 633.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
PSME_00022686-RA No alias (at1g11290 : 619.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00033049-RA No alias (at1g11290 : 583.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
PSME_00035450-RA No alias (at4g33990 : 517.0) embryo defective 2758 (EMB2758);... 0.05 Orthogroups_2024-Update
PSME_00048581-RA No alias (at4g02750 : 590.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
Potri.003G006800 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Orthogroups_2024-Update
Potri.016G065500 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Potri.016G075000 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Pp1s169_110V6 No alias T12J13.14; pentatricopeptide (PPR) repeat-containing... 0.03 Orthogroups_2024-Update
Seita.1G158100.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Seita.5G176900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G213100.1 No alias Unknown function 0.07 Orthogroups_2024-Update
Sobic.002G240900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc01g098150 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc07g008480 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc12g096680 No alias Pentatricopeptide repeat (PPR) superfamily protein (AHRD... 0.03 Orthogroups_2024-Update
Sopen02g018640 No alias PPR repeat family 0.05 Orthogroups_2024-Update
Sopen12g032340 No alias PPR repeat 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004252 serine-type endopeptidase activity IEP Predicted GO
CC GO:0005789 endoplasmic reticulum membrane IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
BP GO:0006508 proteolysis IEP Predicted GO
MF GO:0008233 peptidase activity IEP Predicted GO
MF GO:0008236 serine-type peptidase activity IEP Predicted GO
MF GO:0017171 serine hydrolase activity IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
CC GO:0044432 endoplasmic reticulum part IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 95 142
IPR002885 Pentatricopeptide_repeat 197 241
IPR002885 Pentatricopeptide_repeat 407 455
IPR002885 Pentatricopeptide_repeat 475 506
IPR002885 Pentatricopeptide_repeat 271 297
IPR002885 Pentatricopeptide_repeat 300 327
No external refs found!