Sopen10g004860

Description : SBP domain

Gene families : OG_42_0000135 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000135_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen10g004860
Cluster	HCCA clusters: Cluster_95

Target	Alias	Description	ECC score	Gene Family Method
Brara.E01026.1	No alias	SBP-type transcription factor	0.04	Orthogroups_2024-Update
Glyma.05G019000	No alias	Squamosa promoter-binding protein-like (SBP domain)...	0.02	Orthogroups_2024-Update
HORVU5Hr1G073440.13	No alias	SBP-type transcription factor	0.05	Orthogroups_2024-Update
PSME_00055406-RA	No alias	(q41542\|xth_wheat : 94.4) Probable xyloglucan...	0.03	Orthogroups_2024-Update
Sobic.007G193500.1	No alias	SBP-type transcription factor	0.04	Orthogroups_2024-Update
Solyc07g053810	No alias	Squamosa promoter binding protein 4	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan predictions
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR004333	SBP_dom	51	124

External Links

No external refs found!