Glyma.13G180800

Description : transcription factor-related

Gene families : OG_42_0005910 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005910_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Glycine release: Glyma.13G180800
Cluster	HCCA clusters: Cluster_420

Target	Alias	Description	ECC score	Gene Family Method	Actions
Kfl00249_0030	kfl00249_0030_v1.1	(at4g17020 : 365.0) transcription factor-related;...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
CC	GO:0000439	transcription factor TFIIH core complex	IEA	InterProScan predictions
MF	GO:0001671	ATPase activator activity	IEA	InterProScan predictions
MF	GO:0003674	molecular_function	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005667	transcription factor complex	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006289	nucleotide-excision repair	IEA	InterProScan predictions
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
MF	GO:0008047	enzyme activator activity	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0030234	enzyme regulator activity	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044428	nuclear part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
CC	GO:0044798	nuclear transcription factor complex	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
MF	GO:0060589	nucleoside-triphosphatase regulator activity	None	Extended
MF	GO:0060590	ATPase regulator activity	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0090575	RNA polymerase II transcription factor complex	None	Extended
MF	GO:0098772	molecular function regulator	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000313	organellar ribosome	IEP	Predicted GO
MF	GO:0003697	single-stranded DNA binding	IEP	Predicted GO
CC	GO:0005761	mitochondrial ribosome	IEP	Predicted GO
BP	GO:0016579	protein deubiquitination	IEP	Predicted GO
MF	GO:0019783	ubiquitin-like protein-specific protease activity	IEP	Predicted GO
MF	GO:0036459	thiol-dependent ubiquitinyl hydrolase activity	IEP	Predicted GO
CC	GO:0044429	mitochondrial part	IEP	Predicted GO
BP	GO:0070646	protein modification by small protein removal	IEP	Predicted GO
CC	GO:0098798	mitochondrial protein complex	IEP	Predicted GO
MF	GO:0101005	ubiquitinyl hydrolase activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR004598	TFIIH_p52/Tfb2	15	366

External Links

No external refs found!

Glyma.13G180800

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation