Sopen10g005120

Description : RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Gene families : OG_42_0001097 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001097_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen10g005120
Cluster	HCCA clusters: Cluster_277

Target	Alias	Description	ECC score	Gene Family Method
A4A49_21300	No alias	serinearginine-rich splicing factor rs41	0.03	Orthogroups_2024-Update
At5g52040	No alias	RNA-binding (RRM/RBD/RNP motifs) family protein...	0.03	Orthogroups_2024-Update
MA_111545g0020	No alias	(at3g61860 : 235.0) encodes an arginine/serine-rich...	0.03	Orthogroups_2024-Update
Potri.014G101800	No alias	RNA-binding (RRM/RBD/RNP motifs) family protein	0.04	Orthogroups_2024-Update
Seita.1G107000.1	No alias	RNA splicing factor *(RS31/40/41)	0.05	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	39	101

External Links

No external refs found!