Glyma.13G274900

Description : squamosa promoter-binding protein-like 12

Gene families : OG_42_0000135 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000135_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Glycine release: Glyma.13G274900
Cluster	HCCA clusters: Cluster_74

Target	Alias	Description	ECC score	Gene Family Method
At5g50570	No alias	Squamosa promoter-binding-like protein 13B...	0.03	Orthogroups_2024-Update
Brara.A03153.1	No alias	SBP-type transcription factor	0.04	Orthogroups_2024-Update
Cre07.g345050	No alias	squamosa promoter binding protein-like 10	0.02	Orthogroups_2024-Update
GRMZM5G806833	No alias	Function unknown	0.02	Orthogroups_2024-Update
Glyma.03G143100	No alias	squamosa promoter binding protein-like 9	0.03	Orthogroups_2024-Update
HORVU1Hr1G060750.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
LOC_Os04g46580	No alias	OsSPL7 - SBP-box gene family member, expressed	0.03	Orthogroups_2024-Update
Potri.007G138800	No alias	squamosa promoter binding protein-like 4	0.03	Orthogroups_2024-Update
Potri.008G097900	No alias	Squamosa promoter-binding protein-like (SBP domain)...	0.04	Orthogroups_2024-Update
Sobic.003G406600.1	No alias	SBP-type transcription factor	0.02	Orthogroups_2024-Update
Solyc07g062980	No alias	Squamosa promoter-binding protein, putative (AHRD V3.3...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan predictions
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0006814	sodium ion transport	IEP	Predicted GO
MF	GO:0030976	thiamine pyrophosphate binding	IEP	Predicted GO
MF	GO:1901681	sulfur compound binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR004333	SBP_dom	66	139

External Links

No external refs found!