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  5. Sopen10g005990

Sopen10g005990


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen10g005990
Cluster HCCA clusters: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
Cre08.g358542 No alias Function unknown 0.01 Orthogroups_2024-Update
HORVU0Hr1G014810.2 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU0Hr1G039350.2 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU6Hr1G002090.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU6Hr1G084730.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc10g052420 No alias No description available 0.02 Orthogroups_2024-Update
Sopen00g001490 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen01g036870 No alias Retroviral aspartyl protease 0.02 Orthogroups_2024-Update
Sopen02g001080 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen03g017250 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen03g021380 No alias Reverse transcriptase-like 0.02 Orthogroups_2024-Update
Sopen05g017590 No alias Retrotransposon gag protein 0.03 Orthogroups_2024-Update
Sopen07g004930 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen08g004730 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.01 Orthogroups_2024-Update
Sopen11g012620 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen11g019830 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen11g023740 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen12g011680 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen12g011740 No alias Integrase core domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001584 Integrase_cat-core 1134 1245
IPR023780 Chromo_domain 1440 1493
IPR005162 Retrotrans_gag_dom 151 246
IPR000477 RT_dom 628 785
No external refs found!