| Cluster | HCCA clusters: evm.model.tig00000865.25 expression profile <a href="/cluster/view/5640" class="qtip_tooltip" qtip_href="/cluster/tooltip/5640">Cluster_15</a></strong></td> <td><a href="/cluster/view/5640" data-toggle="tooltip" data-placement="top" title="View cluster as table"><i class="fa fa-list"></i></a> <a href="/cluster/graph/5640" data-toggle="tooltip" data-placement="top" title="View cluster as graph"><i class="fa fa-sitemap"></i></a> <a href="/profile_comparison/cluster/5640" data-toggle="tooltip" data-placement="top" title="Compare profiles in this cluster"><i class="fa fa-area-chart"></i></a> <a href="/heatmap/cluster/5640" data-toggle="tooltip" data-placement="top" title="Heatmap of profiles in this cluster"><i class="fa fa-table"></i></a></td> </tr> </tbody> </table> </div> </div> <br> <h3 class="banner-blue" id="expression_conservation">Expression Context Conservation (<abbr title="Click to show help" href="/help/ecc" data-target="#helpModal">ECC</abbr>)</h3> <div class="table-responsive"> <table class="table table-striped table-separated" id="ecc_hits_table"> <thead> <tr> <th data-sort="string-ins"><span class="sort-icon"></span>Target</th> <th data-sort="string-ins"><span class="sort-icon"></span>Alias</th> <th data-sort="string-ins"><span class="sort-icon"></span>Description</th> <th data-sort="float"><span class="sort-icon"></span><abbr title="Click to show help" href="/help/ecc" data-target="#helpModal">ECC</abbr> score</th> <th data-sort="string-ins"><span class="sort-icon"></span>Gene Family Method</th> <th>Actions</th> </tr> </thead> <tbody> <tr> <td><a href="/sequence/view/889739" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/889739">Brara.K00094.1</a></td> <td><span class="text-muted">No alias</span></td> <td>Unknown function</td> <td>0.04</td> <td>Orthogroups_2024-Update</td> <td><a href="/ecc/graph_pair/3423895" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/693524/14/42" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> <tr> <td><a href="/sequence/view/689695" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/689695">Glyma.12G146100</a></td> <td><span class="text-muted">No alias</span></td> <td>Adenine nucleotide alpha hydrolases-like superfamily protein</td> <td>0.03</td> <td>Orthogroups_2024-Update</td> <td><a href="/ecc/graph_pair/3423917" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/693524/14/42" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> <tr> <td><a href="/sequence/view/185573" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/185573">Kfl00486_0120</a></td> <td>kfl00486_0120_v1.1</td> <td>(at1g11360 : 195.0) Adenine nucleotide alpha...</td> <td>0.02</td> <td>Orthogroups_2024-Update</td> <td><a href="/ecc/graph_pair/3423930" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/693524/14/42" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> <tr> <td><a href="/sequence/view/297824" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/297824">Pp1s171_111V6</a></td> <td><span class="text-muted">No alias</span></td> <td>usp family protein</td> <td>0.03</td> <td>Orthogroups_2024-Update</td> <td><a href="/ecc/graph_pair/3423932" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/693524/14/42" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> <tr> <td><a href="/sequence/view/26552" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/26552">Solyc10g006760</a></td> <td><span class="text-muted">No alias</span></td> <td>Adenine nucleotide alpha hydrolases-like superfamily...</td> <td>0.02</td> <td>Orthogroups_2024-Update</td> <td><a href="/ecc/graph_pair/3423934" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/693524/14/42" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> <tr> <td><a href="/sequence/view/61930" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/61930">Sopen07g031860</a></td> <td><span class="text-muted">No alias</span></td> <td>Universal stress protein family</td> <td>0.03</td> <td>Orthogroups_2024-Update</td> <td><a href="/ecc/graph_pair/3423936" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/693524/14/42" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> </tbody> </table> </div> <br> <h3 class="banner-blue" id="annotation">Functional Annotation</h3> <div class="panel with-nav-tabs panel-default"> <div class="panel-heading"> <ul class="nav nav-tabs"> <li class="active"><a href="#tab1default" data-toggle="tab">GO</a></li> <li><a href="#tab2default" data-toggle="tab">Predicted GO</a></li> <li><a href="#tab3default" data-toggle="tab">InterPro</a></li> </ul> </div> <div> <div class="tab-content"> <div class="tab-pane fade in active" id="tab1default"> <div class="table-responsive"> <table class="table table-striped table-fixed" id="go_table"> <thead> <tr> <th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Type</th> <th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span><abbr title="Click to show help" href="/help/go" data-target="#helpModal">GO</abbr> Term</th> <th class="col-xs-6" data-sort="string-ins"><span class="sort-icon"></span>Name</th> <th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Evidence</th> <th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span>Source</th> </tr> </thead> <tbody> <tr> <td class="col-xs-12"><p>No GO annotation available for this sequence</p></td> </tr> </tbody> </table> </div> <div class="panel-body"> <a href="#" id="go_toggle">Toggle parental</a> </div> </div> <div class="tab-pane fade" id="tab2default"> <div class="table-responsive"> <table class="table table-striped table-fixed" id="predicted_go_table"> <thead> <tr> <th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Type</th> <th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span><abbr title="Click to show help" href="/help/go" data-target="#helpModal">GO</abbr> Term</th> <th class="col-xs-6" data-sort="string-ins"><span class="sort-icon"></span>Name</th> <th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Evidence</th> <th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span>Source</th> </tr> </thead> <tbody> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/77" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways involving amino acids containing sulfur, comprising cysteine, homocysteine, methionine and selenocysteine." [GOC:ai]">GO:0000096</a></td> <td class="col-xs-6">sulfur amino acid metabolic process</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Predicted GO</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/78" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways resulting in the formation of amino acids containing sulfur, comprising cysteine, methionine and selenocysteine." [GOC:ai]">GO:0000097</a></td> <td class="col-xs-6">sulfur amino acid biosynthetic process</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Predicted GO</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/2786" data-toggle="tooltip" data-placement="top" title=""Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide." [ISBN:0198506732]">GO:0003743</a></td> <td class="col-xs-6">translation initiation factor activity</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Predicted GO</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/5049" data-toggle="tooltip" data-placement="top" title=""The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA." [ISBN:019879276X]">GO:0006413</a></td> <td class="col-xs-6">translational initiation</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Predicted GO</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/5153" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways involving cysteine, 2-amino-3-mercaptopropanoic acid." [GOC:go_curators]">GO:0006534</a></td> <td class="col-xs-6">cysteine metabolic process</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Predicted GO</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/5154" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways resulting in the formation of cysteine from other compounds, including serine." [GOC:go_curators]">GO:0006535</a></td> <td class="col-xs-6">cysteine biosynthetic process from serine</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Predicted GO</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/5182" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways involving L-serine, the L-enantiomer of serine, i.e. (2S)-2-amino-3-hydroxypropanoic acid." [CHEBI:17115, GOC:ai, GOC:jsg]">GO:0006563</a></td> <td class="col-xs-6">L-serine metabolic process</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Predicted GO</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/5392" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways involving the nonmetallic element sulfur or compounds that contain sulfur, such as the amino acids methionine and cysteine or the tripeptide glutathione." [GOC:ai]">GO:0006790</a></td> <td class="col-xs-6">sulfur compound metabolic process</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Predicted GO</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/6481" data-toggle="tooltip" data-placement="top" title=""Catalysis of the transfer of an acyl group to an oxygen atom on the acceptor molecule." [GOC:ai]">GO:0008374</a></td> <td class="col-xs-6">O-acyltransferase activity</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Predicted GO</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/7037" data-toggle="tooltip" data-placement="top" title=""Catalysis of the reaction: L-serine + acetyl-CoA = O-acetyl-L-serine + CoA." [EC:2.3.1.30, RHEA:24560]">GO:0009001</a></td> <td class="col-xs-6">serine O-acetyltransferase activity</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Predicted GO</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/7100" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways involving amino acids of the serine family, comprising cysteine, glycine, homoserine, selenocysteine and serine." [GOC:ai]">GO:0009069</a></td> <td class="col-xs-6">serine family amino acid metabolic process</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Predicted GO</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/7101" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways resulting in the formation of amino acids of the serine family, comprising cysteine, glycine, homoserine, selenocysteine and serine." [GOC:ai]">GO:0009070</a></td> <td class="col-xs-6">serine family amino acid biosynthetic process</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Predicted GO</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/10375" data-toggle="tooltip" data-placement="top" title=""Catalysis of the transfer of an acetyl group to an acceptor molecule." [GOC:ai]">GO:0016407</a></td> <td class="col-xs-6">acetyltransferase activity</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Predicted GO</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/10380" data-toggle="tooltip" data-placement="top" title=""Catalysis of the transfer of an acyl group to an oxygen atom on the serine molecule." [GOC:ai]">GO:0016412</a></td> <td class="col-xs-6">serine O-acyltransferase activity</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Predicted GO</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/10381" data-toggle="tooltip" data-placement="top" title=""Catalysis of the transfer of an acetyl group to an oxygen atom on the acceptor molecule." [GOC:ai]">GO:0016413</a></td> <td class="col-xs-6">O-acetyltransferase activity</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Predicted GO</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/12290" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways resulting in the formation of cysteine, 2-amino-3-mercaptopropanoic acid." [GOC:go_curators]">GO:0019344</a></td> <td class="col-xs-6">cysteine biosynthetic process</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Predicted GO</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/22438" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways resulting in the formation of compounds that contain sulfur, such as the amino acids methionine and cysteine or the tripeptide glutathione." [GOC:jl]">GO:0044272</a></td> <td class="col-xs-6">sulfur compound biosynthetic process</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Predicted GO</td> </tr> </tbody> </table> </div> </div> <div class="tab-pane fade" id="tab3default"> <div class="table-responsive"> <table class="table table-striped table-fixed" id="interpro_table"> <thead> <tr> <th class="col-xs-3" data-sort="string-ins"><span class="sort-icon"></span><abbr title="Click to show help" href="/help/interpro_domain" data-target="#helpModal">InterPro domains</abbr></th> <th class="col-xs-5" data-sort="string-ins"><span class="sort-icon"></span>Description</th> <th class="col-xs-2" data-sort="int"><span class="sort-icon"></span>Start</th> <th class="col-xs-2" data-sort="int"><span class="sort-icon"></span>Stop</th> </tr> </thead> <tbody> <tr> <td class="col-xs-3"><a href="/interpro/view/5130">IPR006016</a></td> <td class="col-xs-5">UspA</td> <td class="col-xs-2">30</td> <td class="col-xs-2">190</td> </tr> </tbody> </table> </div> </div> </div> </div> </div> <div class="row"> <div class="col-lg-12 col-md-12 col-sm-12"> <div class="panel panel-default"> <div class="panel-heading" id="links">External Links</div> <div class="table-responsive"> <table class="table table-striped table-separated"> <tbody> <tr> <td><em>No external refs found!</em></td> </td> </tr> </tbody> </table> </div> </div> </div> </div> <div class="modal" id="profileModal" tabindex="-1" role="dialog" aria-labelledby="profileModalLabel"> <div class="modal-dialog" role="document" style="width:1000px;height:800px;"> <div class="modal-content"> </div> </div> </div> </div> </div> </div> <footer class="footer" id="footer"> <div class="container"> <div class="row"> <div class="col-xs-2"><strong class="text-muted"><a href="/features" class="text-muted">CoNekT</a></strong></div> <div class="col-xs-2"><a href="/about" class="text-muted">About</a></div> <div class="col-xs-2"><a href="/contact" class="text-muted">Contact</a></div> <div class="col-xs-2"><a href="/disclaimer" class="text-muted">Disclaimer</a></div> <div class="col-xs-2"><a href="/privacy" class="text-muted">Privacy policy</a></div> </div> </div> </footer> <div class="modal" id="helpModal" tabindex="-1" role="dialog" aria-labelledby="helpModalLabel"> <div class="modal-dialog" role="document" style="width:1000px;height:800px;"> <div class="modal-content"> </div> </div> </div> <div class="modal" id="loaderModal" tabindex="-1" role="dialog" aria-labelledby="loaderModalLabel"> <div class="modal-dialog" role="document" style="width:1000px;height:800px;"> <div class="modal-content"> <div class="modal-body"> <div id="leafy_loader"></div> <p class="text-center text-muted" id="leafy_loader_text">Loading ... please wait ... </p> <p class="text-center" id="leafy_loader_close_btn" style="display:none"><button type="button" class="btn btn-primary" data-dismiss="modal" style>Close</button></p> </div> </div> </div> </div> <script src="/static/js/jquery.min.js"></script> <script src="/static/js/bootstrap.min.js"></script> <script src="/static/js/stupidtable.min.js"></script> <script src="/static/js/TweenMax.min.js"></script> <script src="/static/js/jquery.qtip.min.js"></script> <script src="/static/js/planet_loader.js"></script> <script>
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$(this).removeClass("btn-default");
} else {
$(this).addClass("btn-danger");
$(this).removeClass("btn-success");
$(this).removeClass("btn-default");
}
});
});
});
</script> </body> </html> |
