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Description : histone deacetylase 2C
Gene families : OG_42_0001839 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001839_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Glycine release: Glyma.13G319500 | |
| Cluster | HCCA clusters: Cluster_109 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| A4A49_64689 | No alias | histone deacetylase hdt1 | 0.05 | Orthogroups_2024-Update | |
| At2g27840 | No alias | Histone deacetylase HDT4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M4T3] | 0.06 | Orthogroups_2024-Update | |
| At3g44750 | No alias | Histone deacetylase HDT1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVE6] | 0.05 | Orthogroups_2024-Update | |
| At5g22650 | No alias | Histone deacetylase HDT2 [Source:UniProtKB/Swiss-Prot;Acc:Q56WH4] | 0.03 | Orthogroups_2024-Update | |
| Bradi2g14120 | No alias | histone deacetylase 2B | 0.04 | Orthogroups_2024-Update | |
| Brara.B00987.1 | No alias | HD2-type histone deacetylase *(HD2/HDT) | 0.04 | Orthogroups_2024-Update | |
| Brara.C01007.1 | No alias | HD2-type histone deacetylase *(HD2/HDT) | 0.04 | Orthogroups_2024-Update | |
| Brara.D01665.1 | No alias | HD2-type histone deacetylase *(HD2/HDT) | 0.03 | Orthogroups_2024-Update | |
| Kfl00300_0030 | kfl00300_0030_v1.1 | no hits & (original description: no original description) | 0.02 | Orthogroups_2024-Update | |
| MA_3905g0020 | No alias | no hits & (original description: no original description) | 0.03 | Orthogroups_2024-Update | |
| MA_601245g0010 | No alias | (original description: no original description) | 0.02 | Orthogroups_2024-Update | |
| Mp5g10240.1 | No alias | histone deacetylase (HDT/HD2) | 0.03 | Orthogroups_2024-Update | |
| Potri.009G149400 | No alias | histone deacetylase 3 | 0.05 | Orthogroups_2024-Update | |
| Pp1s7_389V6 | No alias | histone deacetylase | 0.03 | Orthogroups_2024-Update | |
| Seita.3G117500.1 | No alias | HD2-type histone deacetylase *(HD2/HDT) | 0.03 | Orthogroups_2024-Update | |
| Seita.5G422200.1 | No alias | HD2-type histone deacetylase *(HD2/HDT) | 0.06 | Orthogroups_2024-Update | |
| Sobic.003G396600.1 | No alias | HD2-type histone deacetylase *(HD2/HDT) | 0.06 | Orthogroups_2024-Update | |
| Solyc09g009030 | No alias | Histone deacetylase HDT1 (AHRD V3.3 *** HDT1_SOLCH) | 0.07 | Orthogroups_2024-Update | |
| Sopen10g034970 | No alias | Zinc-finger of C2H2 type | 0.03 | Orthogroups_2024-Update | |
| evm.model.tig00000388.65 | No alias | (at4g25340 : 88.6) Encodes a member of the FKBP-type... | 0.04 | Orthogroups_2024-Update | |
| evm.model.tig00000983.33 | No alias | no hits & (original description: no original description) | 0.01 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000271 | polysaccharide biosynthetic process | IEP | Predicted GO |
| BP | GO:0001510 | RNA methylation | IEP | Predicted GO |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Predicted GO |
| CC | GO:0005634 | nucleus | IEP | Predicted GO |
| BP | GO:0005976 | polysaccharide metabolic process | IEP | Predicted GO |
| BP | GO:0006073 | cellular glucan metabolic process | IEP | Predicted GO |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Predicted GO |
| BP | GO:0006351 | transcription, DNA-templated | IEP | Predicted GO |
| BP | GO:0006396 | RNA processing | IEP | Predicted GO |
| BP | GO:0006397 | mRNA processing | IEP | Predicted GO |
| BP | GO:0006400 | tRNA modification | IEP | Predicted GO |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Predicted GO |
| BP | GO:0006777 | Mo-molybdopterin cofactor biosynthetic process | IEP | Predicted GO |
| MF | GO:0008270 | zinc ion binding | IEP | Predicted GO |
| BP | GO:0009058 | biosynthetic process | IEP | Predicted GO |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0009250 | glucan biosynthetic process | IEP | Predicted GO |
| BP | GO:0009451 | RNA modification | IEP | Predicted GO |
| BP | GO:0016051 | carbohydrate biosynthetic process | IEP | Predicted GO |
| BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
| BP | GO:0016071 | mRNA metabolic process | IEP | Predicted GO |
| MF | GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | IEP | Predicted GO |
| MF | GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | IEP | Predicted GO |
| MF | GO:0016759 | cellulose synthase activity | IEP | Predicted GO |
| MF | GO:0016760 | cellulose synthase (UDP-forming) activity | IEP | Predicted GO |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | Predicted GO |
| CC | GO:0019008 | molybdopterin synthase complex | IEP | Predicted GO |
| BP | GO:0019720 | Mo-molybdopterin cofactor metabolic process | IEP | Predicted GO |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Predicted GO |
| BP | GO:0030243 | cellulose metabolic process | IEP | Predicted GO |
| BP | GO:0030244 | cellulose biosynthetic process | IEP | Predicted GO |
| BP | GO:0030488 | tRNA methylation | IEP | Predicted GO |
| CC | GO:0031012 | extracellular matrix | IEP | Predicted GO |
| CC | GO:0031515 | tRNA (m1A) methyltransferase complex | IEP | Predicted GO |
| BP | GO:0033692 | cellular polysaccharide biosynthetic process | IEP | Predicted GO |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | Predicted GO |
| BP | GO:0034637 | cellular carbohydrate biosynthetic process | IEP | Predicted GO |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Predicted GO |
| CC | GO:0034708 | methyltransferase complex | IEP | Predicted GO |
| MF | GO:0035251 | UDP-glucosyltransferase activity | IEP | Predicted GO |
| BP | GO:0042254 | ribosome biogenesis | IEP | Predicted GO |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Predicted GO |
| CC | GO:0043527 | tRNA methyltransferase complex | IEP | Predicted GO |
| BP | GO:0043545 | molybdopterin cofactor metabolic process | IEP | Predicted GO |
| BP | GO:0044042 | glucan metabolic process | IEP | Predicted GO |
| BP | GO:0044264 | cellular polysaccharide metabolic process | IEP | Predicted GO |
| CC | GO:0044421 | extracellular region part | IEP | Predicted GO |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Predicted GO |
| MF | GO:0046527 | glucosyltransferase activity | IEP | Predicted GO |
| BP | GO:0051189 | prosthetic group metabolic process | IEP | Predicted GO |
| BP | GO:0051273 | beta-glucan metabolic process | IEP | Predicted GO |
| BP | GO:0051274 | beta-glucan biosynthetic process | IEP | Predicted GO |
| MF | GO:0051287 | NAD binding | IEP | Predicted GO |
| MF | GO:0051539 | 4 iron, 4 sulfur cluster binding | IEP | Predicted GO |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Predicted GO |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | Predicted GO |
| MF | GO:0097747 | RNA polymerase activity | IEP | Predicted GO |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Predicted GO |
No InterPro domains available for this sequence
| No external refs found! |